myRT

myRT report for GCA_002460775.1_ASM246077v1

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Seq: NJVA01000031.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_31_length_41913_cov_43.2137, whole genome shotgun sequence (41913 bp)
Overview 1 RT 1: 1400-4842 bp Neighborhood of RT #1 [1400, 4907] COG3547 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1400-1789 bp Feature: domain Description: COG3547 Location: 1466-1727 bp Feature: domain Description: COG3547 Location: 1 466-1 727 bp Feature: gene Location: 1948-2394 bp Feature: domain Description: PHA02517 Location: 1951-2392 bp Feature: domain Description: PHA0251 7 Location: 1 951 -2392 bp Feature: gene Location: 2511-4034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2784-3516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2784-351 6 bp Feature: domain Description: GIIM Note: maturase Location: 3591-3789 bp Feature: domain Description: GIIM Note: maturase Location: 3591 -3789 bp Feature: gene Location: 3988-4413 bp Feature: gene Location: 4626-4907 bp Feature: domain Description: PHA02517 Location: 4632-4842 bp Feature: domain Description: PHA0251 7 Location: 4632-4842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NJVA01000003.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_3_length_313949_cov_42.6606, whole genome shotgun sequence (313949 bp)
Overview 1 RT 1: 252153-257518 bp Neighborhood of RT #1 [252153, 257553] RVT-UG7 PRK09692 proA Feature: gene Location: 252153-252293 bp Feature: gene Location: 252403-253143 bp Feature: gene Location: 253140-254768 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 253548-253977 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 53548-2 53977 bp Feature: gene Location: 254761-255945 bp Feature: domain Description: PRK09692 Location: 254767-255922 bp Feature: domain Description: PRK09692 Location: 2 54767-2 5592 2 bp Feature: gene Location: 256300-257553 bp Feature: domain Description: proA Location: 256327-257518 bp Feature: domain Description: proA Location: 2 5632 7-2 57518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: NJVA01000052.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_52_length_9502_cov_58.8121, whole genome shotgun sequence (9502 bp)
Overview 1 RT 1: 1483-6215 bp Neighborhood of RT #1 [1483, 6340] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc DUF1380 Feature: gene Location: 1483-1719 bp Feature: domain Description: DUF905 Location: 1516-1717 bp Feature: domain Description: DUF905 Location: 1516-1717 bp Feature: gene Location: 1773-2213 bp Feature: domain Description: PRK13732 Location: 1779-2211 bp Feature: domain Description: PRK13 73 2 Location: 1779-2211 bp Feature: gene Location: 2408-4309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2675-3506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2675-3 506 bp Feature: domain Description: Intron_maturas2 Location: 3620-3878 bp Feature: domain Description: Intron_maturas2 Location: 3 620-3 878 bp Feature: domain Description: HNHc Note: nucleases Location: 4052-4214 bp Feature: domain Description: HNHc Note: nucleases Location: 4052-4214 bp Feature: gene Location: 5345-5659 bp Feature: gene Location: 5918-6340 bp Feature: domain Description: DUF1380 Location: 5921-6215 bp Feature: domain Description: DUF13 80 Location: 5921-6215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NJVA01000064.1 Escherichia coli strain MOD1-EC1635 MOD1-EC1635_64_length_3283_cov_84.0203, whole genome shotgun sequence (3283 bp)
Overview 1 RT 1: 551-3131 bp Neighborhood of RT #1 [551, 3187] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 551-820 bp Feature: gene Location: 1301-1441 bp Feature: gene Location: 1463-3187 bp Feature: domain Description: RVT_N Location: 1520-1757 bp Feature: domain Description: RVT_N Location: 1520-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808-2456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808-24 56 bp Feature: domain Description: YkfC Location: 2588-2744 bp Feature: domain Description: YkfC Location: 2588-274 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2972-3131 bp Feature: domain Description: HNHc Note: nucleases Location: 2972-3131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)