myRT

myRT report for GCA_002460785.1_ASM246078v1

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Seq: NJZI01000126.1 Escherichia coli strain MOD1-EC1636 MOD1-EC1636_126_length_2776_cov_51.6765, whole genome shotgun sequence (2776 bp)
Overview 1 RT 1: 1-2771 bp Neighborhood of RT #1 [1, 2773] RVT_N RVT-GII YkfC HNHc DUF1281 Feature: gene Location: 1-183 bp Feature: gene Location: 664-804 bp Feature: gene Location: 826-2550 bp Feature: domain Description: RVT_N Location: 883-1120 bp Feature: domain Description: RVT_N Location: 883-1 1 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171-1819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 -1 81 9 bp Feature: domain Description: YkfC Location: 1951-2107 bp Feature: domain Description: YkfC Location: 1 951 -21 07 bp Feature: domain Description: HNHc Note: nucleases Location: 2335-2494 bp Feature: domain Description: HNHc Note: nucleases Location: 2335-2494 bp Feature: gene Location: 2627-2773 bp Feature: domain Description: DUF1281 Location: 2696-2771 bp Feature: domain Description: DUF1 281 Location: 2696-2771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924)

Seq: NJZI01000132.1 Escherichia coli strain MOD1-EC1636 MOD1-EC1636_132_length_2419_cov_110.41, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 671-2303 bp Neighborhood of RT #1 [671, 2338] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 671-2338 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: HNHc Note: nucleases Location: 2144-2303 bp Feature: domain Description: HNHc Note: nucleases Location: 2 144-2 303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NJZI01000024.1 Escherichia coli strain MOD1-EC1636 MOD1-EC1636_24_length_75842_cov_38.2313, whole genome shotgun sequence (75840 bp)
Overview 1 RT 1: 71384-75828 bp Neighborhood of RT #1 [71384, 75839] prfC SLATT_5 RVT-UG17 Caudo_TAP Feature: gene Location: 71384-72970 bp Feature: domain Description: prfC Location: 71402-72968 bp Feature: domain Description: prfC Location: 71402-72968 bp Feature: gene Location: 73501-74205 bp Feature: domain Description: SLATT_5 Location: 73663-74173 bp Feature: domain Description: SLATT_5 Location: 73 663 -74173 bp Feature: gene Location: 74183-75553 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 74411-75017 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 74411-75017 bp Feature: gene Location: 75666-75839 bp Feature: domain Description: Caudo_TAP Location: 75672-75828 bp Feature: domain Description: Caudo_TAP Location: 75672-75828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413)