myRT

myRT report for GCA_002460895.1_ASM246089v1

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Seq: NJZM01000022.1 Escherichia coli strain MOD1-EC1569 MOD1-EC1569_22_length_68065_cov_35.2164, whole genome shotgun sequence (68065 bp)
Overview 1 RT 1: 42508-46131 bp 2 RT 2: 49389-52030 bp Neighborhood of RT #1 [42508, 46256] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [49389, 52030] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 42508-42765 bp Feature: gene Location: 42796-43071 bp Feature: gene Location: 43645-45312 bp Feature: domain Description: RVT_N Location: 43693-43930 bp Feature: domain Description: RVT_N Location: 43693-43930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43981-44623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43981 -44623 bp Feature: domain Description: GIIM Note: maturase Location: 44674-44908 bp Feature: domain Description: GIIM Note: maturase Location: 44674-44908 bp Feature: domain Description: HNHc Note: nucleases Location: 45118-45277 bp Feature: domain Description: HNHc Note: nucleases Location: 451 1 8-45277 bp Feature: gene Location: 45426-45782 bp Feature: gene Location: 45834-46256 bp Feature: domain Description: DUF1380 Location: 45837-46131 bp Feature: domain Description: DUF1 380 Location: 45837-461 31 bp Feature: gene Location: 49389-49589 bp Feature: gene Location: 49700-49837 bp Feature: gene Location: 49862-51562 bp Feature: domain Description: RVT_N Location: 49916-50159 bp Feature: domain Description: RVT_N Location: 4991 6-501 59 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50207-50840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50207-50840 bp Feature: domain Description: GIIM Note: maturase Location: 50891-51125 bp Feature: domain Description: GIIM Note: maturase Location: 50891 -51 1 25 bp Feature: domain Description: HNHc Note: nucleases Location: 51356-51506 bp Feature: domain Description: HNHc Note: nucleases Location: 51 356-51 506 bp Feature: gene Location: 51645-51851 bp Feature: gene Location: 51878-52030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NJZM01000029.1 Escherichia coli strain MOD1-EC1569 MOD1-EC1569_29_length_43892_cov_17.0014, whole genome shotgun sequence (43809 bp)
Overview 1 RT 1: 1890-5761 bp Neighborhood of RT #1 [1890, 5829] Y2_Tnp group_II_RT_mat RVT-GII GIIM RVT-GII DDE_Tnp_1 Feature: gene Location: 1890-2633 bp Feature: domain Description: Y2_Tnp Location: 2205-2598 bp Feature: domain Description: Y2 _Tnp Location: 2 2 05-2 598 bp Feature: gene Location: 2861-3199 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3023-3164 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 302 3-3164 bp Feature: gene Location: 3312-3917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318-3399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3318-3399 bp Feature: domain Description: GIIM Note: maturase Location: 3474-3693 bp Feature: domain Description: GIIM Note: maturase Location: 3474-3693 bp Feature: gene Location: 3899-4327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905-4148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3905-4148 bp Feature: gene Location: 4441-4635 bp Feature: gene Location: 4879-5829 bp Feature: domain Description: DDE_Tnp_1 Location: 5038-5761 bp Feature: domain Description: DDE_Tnp_1 Location: 5038-5761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: NJZM01000004.1 Escherichia coli strain MOD1-EC1569 MOD1-EC1569_4_length_266947_cov_37.3421, whole genome shotgun sequence (266947 bp)
Overview 1 RT 1: 4065-8829 bp Neighborhood of RT #1 [4065, 8831] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 4065-4199 bp Feature: gene Location: 4301-4474 bp Feature: gene Location: 4803-6407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5094-5685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5094-5685 bp Feature: domain Description: TIR_2 Location: 6012-6345 bp Feature: domain Description: TIR_2 Location: 6012-63 45 bp Feature: gene Location: 6765-7025 bp Feature: domain Description: PRK10597 Location: 6768-7008 bp Feature: domain Description: PRK10597 Location: 6768-7008 bp Feature: gene Location: 7245-8831 bp Feature: domain Description: prfC Location: 7263-8829 bp Feature: domain Description: prfC Location: 7263 -8829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)