myRT

myRT report for GCA_002461055.1_ASM246105v1

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Seq: NJVN01000103.1 Escherichia coli strain MOD1-EC1558 MOD1-EC1558_103_length_2272_cov_168.177, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NJVN01000029.1 Escherichia coli strain MOD1-EC1558 MOD1-EC1558_29_length_54459_cov_24.1422, whole genome shotgun sequence (54459 bp)
Overview 1 RT 1: 29431-33310 bp Neighborhood of RT #1 [29431, 33315] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 29431-30147 bp Feature: domain Description: rph Location: 29434-30142 bp Feature: domain Description: rph Location: 2 9434-30142 bp Feature: gene Location: 30198-30854 bp Feature: domain Description: pyrE Location: 30216-30849 bp Feature: domain Description: pyrE Location: 302 16-30849 bp Feature: gene Location: 31151-32110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31286-31835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 312 86-31835 bp Feature: gene Location: 32154-32750 bp Feature: domain Description: slmA Location: 32160-32736 bp Feature: domain Description: slmA Location: 32 160-32 736 bp Feature: gene Location: 32857-33315 bp Feature: domain Description: dut Location: 32863-33310 bp Feature: domain Description: dut Location: 32 863-33310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NJVN01000076.1 Escherichia coli strain MOD1-EC1558 MOD1-EC1558_76_length_7587_cov_24.8858, whole genome shotgun sequence (7587 bp)
Overview 1 RT 1: 4012-7585 bp Neighborhood of RT #1 [4012, 7585] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4012-4245 bp Feature: domain Description: DUF905 Location: 4042-4240 bp Feature: domain Description: DUF905 Location: 4042-4240 bp Feature: gene Location: 4301-4741 bp Feature: domain Description: PRK13732 Location: 4307-4739 bp Feature: domain Description: PRK13 73 2 Location: 43 07-473 9 bp Feature: gene Location: 4936-6837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5203-6034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5203 -603 4 bp Feature: domain Description: Intron_maturas2 Location: 6148-6406 bp Feature: domain Description: Intron_maturas2 Location: 6148-6406 bp Feature: domain Description: HNHc Note: nucleases Location: 6580-6742 bp Feature: domain Description: HNHc Note: nucleases Location: 6580-6742 bp Feature: gene Location: 7400-7585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)