myRT

myRT report for GCA_002461175.1_ASM246117v1

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Seq: NJVT01000035.1 Escherichia coli strain MOD1-EC1549 MOD1-EC1549_35_length_30930_cov_62.6031, whole genome shotgun sequence (30930 bp)
Overview 1 RT 1: 23558-27301 bp Neighborhood of RT #1 [23558, 27312] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23558-24040 bp Feature: domain Description: SmpB Location: 23588-24035 bp Feature: domain Description: SmpB Location: 23588-24035 bp Feature: gene Location: 24174-24341 bp Feature: gene Location: 24726-25499 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24861-25314 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 24861 -2531 4 bp Feature: gene Location: 25903-26121 bp Feature: domain Description: PRK09678 Location: 25906-26104 bp Feature: domain Description: PRK09678 Location: 25906-261 04 bp Feature: gene Location: 26212-27312 bp Feature: domain Description: D Location: 26218-27301 bp Feature: domain Description: D Location: 2621 8-27301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NJVT01000006.1 Escherichia coli strain MOD1-EC1549 MOD1-EC1549_6_length_224557_cov_59.989, whole genome shotgun sequence (224557 bp)
Overview 1 RT 1: 197750-202902 bp Neighborhood of RT #1 [197750, 203051] InsE PHA02517 RVT-GII GIIM PRK09183 COG4584 Feature: gene Location: 197750-198076 bp Feature: domain Description: InsE Location: 197753-198074 bp Feature: domain Description: InsE Location: 197753-198074 bp Feature: gene Location: 198076-198555 bp Feature: domain Description: PHA02517 Location: 198136-198490 bp Feature: domain Description: PHA02 517 Location: 198136-198490 bp Feature: gene Location: 199147-200670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199420-200152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19942 0-2 00152 bp Feature: domain Description: GIIM Note: maturase Location: 200227-200425 bp Feature: domain Description: GIIM Note: maturase Location: 2 002 2 7-2 0042 5 bp Feature: gene Location: 201040-202029 bp Feature: domain Description: PRK09183 Location: 201046-201799 bp Feature: domain Description: PRK09183 Location: 2 01046-2 01799 bp Feature: gene Location: 202029-203051 bp Feature: domain Description: COG4584 Location: 202032-202902 bp Feature: domain Description: COG4584 Location: 2 02 032 -2 02 902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )