myRT

myRT report for GCA_002461505.1_ASM246150v1

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Seq: NKAA01000014.1 Escherichia coli strain MOD1-EC1404 MOD1-EC1404_14_length_87028_cov_40.3957, whole genome shotgun sequence (87028 bp)
Overview 1 RT 1: 14790-18669 bp Neighborhood of RT #1 [14790, 18674] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 14790-15506 bp Feature: domain Description: rph Location: 14793-15501 bp Feature: domain Description: rph Location: 1 4793-1 5501 bp Feature: gene Location: 15557-16213 bp Feature: domain Description: pyrE Location: 15575-16208 bp Feature: domain Description: pyrE Location: 1 5575-1 6208 bp Feature: gene Location: 16510-17469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16645-17194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6645-1 71 94 bp Feature: gene Location: 17513-18109 bp Feature: domain Description: slmA Location: 17519-18095 bp Feature: domain Description: slmA Location: 1 751 9-1 8095 bp Feature: gene Location: 18216-18674 bp Feature: domain Description: dut Location: 18222-18669 bp Feature: domain Description: dut Location: 1 8222-1 8669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NKAA01000047.1 Escherichia coli strain MOD1-EC1404 MOD1-EC1404_47_length_37663_cov_25.8055, whole genome shotgun sequence (37663 bp)
Overview 1 RT 1: 7197-11318 bp Neighborhood of RT #1 [7197, 11318] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 7197-7847 bp Feature: domain Description: TIGR02646 Location: 7263-7662 bp Feature: domain Description: TIGR02 646 Location: 72 63-7662 bp Feature: gene Location: 7850-9502 bp Feature: domain Description: COG3950 Location: 8048-9464 bp Feature: domain Description: COG3950 Location: 8048-9464 bp Feature: gene Location: 9499-10434 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9601-10201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9601-102 01 bp Feature: gene Location: 10449-10583 bp Feature: gene Location: 10857-11318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: NKAA01000007.1 Escherichia coli strain MOD1-EC1404 MOD1-EC1404_7_length_113997_cov_38.0806, whole genome shotgun sequence (113997 bp)
Overview 1 RT 1: 105708-111744 bp Neighborhood of RT #1 [105708, 111761] PRK09692 RVT-UG5 nitrilase Psu Feature: gene Location: 105708-105932 bp Feature: gene Location: 106077-107333 bp Feature: domain Description: PRK09692 Location: 106086-107289 bp Feature: domain Description: PRK09692 Location: 106086-107289 bp Feature: gene Location: 107425-110301 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 107899-108427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 107899-108427 bp Feature: domain Description: nitrilase Location: 109639-110221 bp Feature: domain Description: nitrilase Location: 10963 9-110221 bp Feature: gene Location: 110298-110987 bp Feature: gene Location: 111189-111761 bp Feature: domain Description: Psu Location: 111207-111744 bp Feature: domain Description: Psu Location: 111207-111744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)