myRT

myRT report for GCA_002461615.1_ASM246161v1

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Seq: NJWF01000138.1 Escherichia coli strain MOD1-EC1397 MOD1-EC1397_138_length_6419_cov_74.1708, whole genome shotgun sequence (6419 bp)
Overview 1 RT 1: 129-2715 bp Neighborhood of RT #1 [129, 2729] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 129-260 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 41 -234 bp Feature: gene Location: 738-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1 578 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1 656-1 878 bp Feature: gene Location: 2071-2217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-21 94 bp Feature: gene Location: 2244-2729 bp Feature: domain Description: COG3547 Location: 2262-2715 bp Feature: domain Description: COG3547 Location: 2262-271 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJWF01000151.1 Escherichia coli strain MOD1-EC1397 MOD1-EC1397_151_length_5190_cov_76.302, whole genome shotgun sequence (5190 bp)
Overview 1 RT 1: 330-4641 bp Neighborhood of RT #1 [330, 4643] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 330-551 bp Feature: domain Description: Tra5 Location: 342-534 bp Feature: domain Description: Tra5 Location: 342 -534 bp Feature: gene Location: 564-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-152 1 bp Feature: gene Location: 1990-2517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996-2140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996-2 140 bp Feature: domain Description: GIIM Note: maturase Location: 2224-2440 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 4-2 440 bp Feature: gene Location: 2870-3112 bp Feature: gene Location: 3024-4643 bp Feature: domain Description: ushA Location: 3039-4641 bp Feature: domain Description: ushA Location: 3039-4641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJWF01000022.1 Escherichia coli strain MOD1-EC1397 MOD1-EC1397_22_length_65950_cov_22.8455, whole genome shotgun sequence (65950 bp)
Overview 1 RT 1: 56-4055 bp Neighborhood of RT #1 [56, 4099] RVT-UG5 PRK09692 Feature: gene Location: 56-1915 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 62-221 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 62-221 bp Feature: gene Location: 2203-2751 bp Feature: gene Location: 2843-4099 bp Feature: domain Description: PRK09692 Location: 2852-4055 bp Feature: domain Description: PRK09692 Location: 2852-4055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)

Seq: NJWF01000034.1 Escherichia coli strain MOD1-EC1397 MOD1-EC1397_34_length_43216_cov_23.2386, whole genome shotgun sequence (43216 bp)
Overview 1 RT 1: 36914-40794 bp Neighborhood of RT #1 [36914, 40799] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 36914-37372 bp Feature: domain Description: dut Location: 36920-37367 bp Feature: domain Description: dut Location: 36920-37367 bp Feature: gene Location: 37479-38075 bp Feature: domain Description: slmA Location: 37485-38061 bp Feature: domain Description: slmA Location: 374 85-38061 bp Feature: gene Location: 38121-39080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38256-38805 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38256-38805 bp Feature: gene Location: 39376-40032 bp Feature: domain Description: pyrE Location: 39394-40027 bp Feature: domain Description: pyrE Location: 39394 -4 0027 bp Feature: gene Location: 40083-40799 bp Feature: domain Description: rph Location: 40086-40794 bp Feature: domain Description: rph Location: 4 0086-4 0794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)