myRT

myRT report for GCA_002462115.1_ASM246211v1

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Seq: NKPG01000161.1 Escherichia coli strain MOD1-EC1498 MOD1-EC1498_162_length_2344_cov_88.5104, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1 624-1 858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NKPG01000047.1 Escherichia coli strain MOD1-EC1498 MOD1-EC1498_47_length_30999_cov_22.327, whole genome shotgun sequence (30999 bp)
Overview 1 RT 1: 10486-14591 bp Neighborhood of RT #1 [10486, 14591] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 10486-10896 bp Feature: gene Location: 11116-11517 bp Feature: domain Description: DUF932 Location: 11227-11509 bp Feature: domain Description: DUF932 Location: 112 2 7-11509 bp Feature: gene Location: 12009-13787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12270-13065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 70-13065 bp Feature: domain Description: Intron_maturas2 Location: 13191-13416 bp Feature: domain Description: Intron_maturas2 Location: 13191-13416 bp Feature: domain Description: HNHc Note: nucleases Location: 13611-13761 bp Feature: domain Description: HNHc Note: nucleases Location: 13611-13761 bp Feature: gene Location: 13960-14346 bp Feature: domain Description: DUF932 Location: 13966-14311 bp Feature: domain Description: DUF932 Location: 13966-14311 bp Feature: gene Location: 14346-14591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NKPG01000069.1 Escherichia coli strain MOD1-EC1498 MOD1-EC1498_69_length_15106_cov_23.7152, whole genome shotgun sequence (15106 bp)
Overview 1 RT 1: 441-3925 bp Neighborhood of RT #1 [441, 3925] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 441-593 bp Feature: gene Location: 663-1565 bp Feature: domain Description: DUF1281 Location: 732-1260 bp Feature: domain Description: DUF1281 Location: 73 2-1260 bp Feature: domain Description: DUF1281_C Location: 1266-1494 bp Feature: domain Description: DUF1281_C Location: 1266-1494 bp Feature: gene Location: 1642-3366 bp Feature: RT Description: RVT_N Location: 1699-1936 bp Feature: RT Description: RVT_N Location: 1699-193 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987-2635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987-263 5 bp Feature: domain Description: YkfC Location: 2767-2923 bp Feature: domain Description: YkfC Location: 2767-2923 bp Feature: domain Description: HNHc Note: nucleases Location: 3151-3310 bp Feature: domain Description: HNHc Note: nucleases Location: 3 151-3 3 10 bp Feature: gene Location: 3407-3547 bp Feature: gene Location: 3629-3925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)