myRT

myRT report for GCA_002462295.1_ASM246229v1

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Seq: NOWO01000112.1 Escherichia coli strain MOD1-EC6664 MOD1-EC6664_112_length_2272_cov_271.232, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOWO01000011.1 Escherichia coli strain MOD1-EC6664 MOD1-EC6664_11_length_113085_cov_55.4453, whole genome shotgun sequence (113085 bp)
Overview 1 RT 1: 367-3267 bp Neighborhood of RT #1 [367, 3267] RVT-Retrons TIR_2 Pox_D5 Feature: gene Location: 367-501 bp Feature: gene Location: 677-2308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 992-1589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 992 -1589 bp Feature: domain Description: TIR_2 Location: 1913-2270 bp Feature: domain Description: TIR_2 Location: 1913-2 2 70 bp Feature: gene Location: 2546-2698 bp Feature: domain Description: Pox_D5 Location: 2549-2672 bp Feature: domain Description: Pox_D5 Location: 2 549-2 672 bp Feature: gene Location: 3085-3267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288)

Seq: NOWO01000030.1 Escherichia coli strain MOD1-EC6664 MOD1-EC6664_30_length_54852_cov_51.9318, whole genome shotgun sequence (54852 bp)
Overview 1 RT 1: 46862-53324 bp Neighborhood of RT #1 [46862, 54322] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 46862-49444 bp Feature: domain Description: mutS1 Location: 46913-49433 bp Feature: domain Description: mutS1 Location: 46913 -4943 3 bp Feature: gene Location: 49589-51049 bp Feature: domain Description: INT_Rci_Hp1_C Location: 49964-50171 bp Feature: domain Description: INT_Rci_Hp1_C Location: 49964-50171 bp Feature: domain Description: INT_P4_C Location: 50390-50927 bp Feature: domain Description: INT_P4_C Location: 503 90-50927 bp Feature: gene Location: 52304-54322 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 52874-53324 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 52874-53 3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8