myRT

myRT report for GCA_002462355.1_ASM246235v1

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Seq: NVPS01000041.1 Escherichia coli strain MOD1-EC5207 MOD1-EC5207_41_length_30221_cov_33.6621, whole genome shotgun sequence (30221 bp)
Overview 1 RT 1: 19902-23386 bp Neighborhood of RT #1 [19902, 23386] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 19902-20054 bp Feature: gene Location: 20124-21026 bp Feature: domain Description: DUF1281 Location: 20193-20721 bp Feature: domain Description: DUF1 281 Location: 201 93-20721 bp Feature: domain Description: DUF1281_C Location: 20727-20967 bp Feature: domain Description: DUF1 281 _C Location: 20727-20967 bp Feature: gene Location: 21103-22827 bp Feature: RT Description: RVT_N Location: 21160-21397 bp Feature: RT Description: RVT_N Location: 21 1 60-21 397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21448-22096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 448-22096 bp Feature: domain Description: YkfC Location: 22228-22384 bp Feature: domain Description: YkfC Location: 22228-22384 bp Feature: domain Description: HNHc Note: nucleases Location: 22612-22771 bp Feature: domain Description: HNHc Note: nucleases Location: 2261 2-22771 bp Feature: gene Location: 22868-23008 bp Feature: gene Location: 23090-23386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NVPS01000050.1 Escherichia coli strain MOD1-EC5207 MOD1-EC5207_50_length_14223_cov_33.5631, whole genome shotgun sequence (14223 bp)
Overview 1 RT 1: 3840-7005 bp Neighborhood of RT #1 [3840, 7016] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 3840-4346 bp Feature: domain Description: HlyC Location: 3861-4221 bp Feature: domain Description: HlyC Location: 3861-42 2 1 bp Feature: gene Location: 4427-5443 bp Feature: domain Description: YkfC Location: 5123-5393 bp Feature: domain Description: YkfC Location: 512 3-5393 bp Feature: gene Location: 5304-6116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5397-5976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5397-5976 bp Feature: gene Location: 6289-6474 bp Feature: gene Location: 6597-7016 bp Feature: domain Description: PHA02517 Location: 6600-7005 bp Feature: domain Description: PHA02 517 Location: 6600-7005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: NVPS01000063.1 Escherichia coli strain MOD1-EC5207 MOD1-EC5207_63_length_9332_cov_3.40421, whole genome shotgun sequence (9332 bp)
Overview 1 RT 1: 2-3164 bp Neighborhood of RT #1 [2, 3250] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 2-463 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-308 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5-3 08 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 329-437 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 29-43 7 bp Feature: gene Location: 1126-1896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129-1543 bp Feature: domain Description: GIIM Note: maturase Location: 1594-1759 bp Feature: domain Description: GIIM Note: maturase Location: 1594-1759 bp Feature: gene Location: 1935-2417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2256-2343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2256-23 43 bp Feature: gene Location: 2590-2769 bp Feature: gene Location: 2864-3250 bp Feature: domain Description: CdiI_3 Location: 2888-3164 bp Feature: domain Description: CdiI_3 Location: 2888-3 164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), CdiI_3 (pfam18616)