myRT

myRT report for GCA_002463225.1_ASM246322v1

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Seq: NTOD01000045.1 Escherichia coli strain MOD1-EC6218 MOD1-EC6218_45_length_10169_cov_45.4045, whole genome shotgun sequence (10169 bp)
Overview 1 RT 1: 6743-9816 bp Neighborhood of RT #1 [6743, 9816] COG3547 RVT-GII RVT-GII Feature: gene Location: 6743-7612 bp Feature: domain Description: COG3547 Location: 6746-7559 bp Feature: domain Description: COG3547 Location: 6746-7559 bp Feature: gene Location: 7704-7886 bp Feature: gene Location: 7984-8877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8002-8509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8002-8509 bp Feature: gene Location: 8892-9440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9300-9414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9300-941 4 bp Feature: gene Location: 9474-9614 bp Feature: gene Location: 9622-9816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: NTOD01000052.1 Escherichia coli strain MOD1-EC6218 MOD1-EC6218_52_length_6061_cov_46.8847, whole genome shotgun sequence (6060 bp)
Overview 1 RT 1: 2747-6017 bp Neighborhood of RT #1 [2747, 6058] rve RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 2747-3439 bp Feature: domain Description: rve Location: 2882-3248 bp Feature: domain Description: rve Location: 2 882 -32 48 bp Feature: gene Location: 3584-3751 bp Feature: gene Location: 3777-5009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3978-4632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3978-4632 bp Feature: domain Description: GIIM Note: maturase Location: 4710-4932 bp Feature: domain Description: GIIM Note: maturase Location: 4710-4932 bp Feature: gene Location: 5004-5423 bp Feature: gene Location: 5471-6058 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5495-6017 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5495-6017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: NTOD01000063.1 Escherichia coli strain MOD1-EC6218 MOD1-EC6218_63_length_3453_cov_49.4242, whole genome shotgun sequence (3453 bp)
Overview 1 RT 1: 3-3445 bp Neighborhood of RT #1 [3, 3450] COG3436 RVT_N RVT-GII YkfC HNHc TnpB_IS66 Feature: gene Location: 3-776 bp Feature: domain Description: COG3436 Location: 315-777 bp Feature: domain Description: COG3 43 6 Location: 3 15-777 bp Feature: gene Location: 919-2589 bp Feature: domain Description: RVT_N Location: 967-1210 bp Feature: domain Description: RVT_N Location: 967-1210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255-1897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1255-1897 bp Feature: domain Description: YkfC Location: 2029-2272 bp Feature: domain Description: YkfC Location: 2029-2272 bp Feature: domain Description: HNHc Note: nucleases Location: 2395-2554 bp Feature: domain Description: HNHc Note: nucleases Location: 23 95-2554 bp Feature: gene Location: 2616-3023 bp Feature: gene Location: 3187-3450 bp Feature: domain Description: TnpB_IS66 Location: 3190-3445 bp Feature: domain Description: TnpB_IS66 Location: 3 190-3 445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), TnpB_IS66 (pfam05717)

Seq: NTOD01000064.1 Escherichia coli strain MOD1-EC6218 MOD1-EC6218_64_length_3421_cov_49.6145, whole genome shotgun sequence (3420 bp)
Overview 1 RT 1: 725-3245 bp Neighborhood of RT #1 [725, 3262] DUF987 CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 725-946 bp Feature: domain Description: DUF987 Location: 728-920 bp Feature: domain Description: DUF987 Location: 728-920 bp Feature: gene Location: 965-1372 bp Feature: domain Description: CbeA_antitoxin Location: 1079-1325 bp Feature: domain Description: CbeA_antitoxin Location: 1079-1325 bp Feature: gene Location: 1409-2650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1616-2273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1616-2273 bp Feature: domain Description: GIIM Note: maturase Location: 2354-2576 bp Feature: domain Description: GIIM Note: maturase Location: 2354 -2576 bp Feature: gene Location: 2677-3027 bp Feature: gene Location: 3068-3262 bp Feature: domain Description: CbeA_antitoxin Location: 3188-3245 bp Feature: domain Description: CbeA_antitoxin Location: 3188-324 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF987 (pfam06174), CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)