myRT

myRT report for GCA_002463285.1_ASM246328v1

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Seq: NTOJ01000032.1 Escherichia coli strain MOD1-EC6206 MOD1-EC6206_32_length_49672_cov_32.5957, whole genome shotgun sequence (49672 bp)
Overview 1 RT 1: 45210-49660 bp Neighborhood of RT #1 [45210, 49671] prfC SLATT_5 RVT-UG17 Caudo_TAP Feature: gene Location: 45210-46796 bp Feature: domain Description: prfC Location: 45228-46794 bp Feature: domain Description: prfC Location: 45228-46794 bp Feature: gene Location: 47327-48031 bp Feature: domain Description: SLATT_5 Location: 47489-47999 bp Feature: domain Description: SLATT_5 Location: 47489-47999 bp Feature: gene Location: 48009-49379 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48237-48843 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 48237-48843 bp Feature: gene Location: 49492-49671 bp Feature: domain Description: Caudo_TAP Location: 49495-49660 bp Feature: domain Description: Caudo_TAP Location: 49495-49660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413)

Seq: NTOJ01000068.1 Escherichia coli strain MOD1-EC6206 MOD1-EC6206_68_length_11717_cov_77.234, whole genome shotgun sequence (11717 bp)
Overview 1 RT 1: 8755-11649 bp Neighborhood of RT #1 [8755, 11714] IS285 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8755-9144 bp Feature: domain Description: IS285 Location: 8785-9094 bp Feature: domain Description: IS2 85 Location: 8785-9094 bp Feature: gene Location: 9272-9718 bp Feature: domain Description: PHA02517 Location: 9275-9716 bp Feature: domain Description: PHA02 517 Location: 92 75-9716 bp Feature: gene Location: 9835-10686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9853-10168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9853-10168 bp Feature: domain Description: GIIM Note: maturase Location: 10243-10462 bp Feature: domain Description: GIIM Note: maturase Location: 102 43-10462 bp Feature: gene Location: 10384-10998 bp Feature: gene Location: 11211-11714 bp Feature: domain Description: PHA02517 Location: 11295-11649 bp Feature: domain Description: PHA02 517 Location: 112 95-11649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NTOJ01000075.1 Escherichia coli strain MOD1-EC6206 MOD1-EC6206_75_length_9692_cov_51.6425, whole genome shotgun sequence (9692 bp)
Overview 1 RT 1: 2547-5188 bp Neighborhood of RT #1 [2547, 5188] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2547-2747 bp Feature: gene Location: 2858-2995 bp Feature: gene Location: 3020-4720 bp Feature: domain Description: RVT_N Location: 3074-3317 bp Feature: domain Description: RVT_N Location: 3 074-3 3 17 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362-3998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 62-3 998 bp Feature: domain Description: GIIM Note: maturase Location: 4049-4283 bp Feature: domain Description: GIIM Note: maturase Location: 4049-4283 bp Feature: domain Description: HNHc Note: nucleases Location: 4514-4664 bp Feature: domain Description: HNHc Note: nucleases Location: 4514-4664 bp Feature: gene Location: 4845-5009 bp Feature: gene Location: 5036-5188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)