myRT

myRT report for GCA_002463495.1_ASM246349v1

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Seq: NTOW01000124.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_124_length_1329_cov_44.1062, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 3-1263 bp Neighborhood of RT #1 [3, 1328] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 921-1328 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Feature: domain Description: PHA0251 7 Location: 924-1 263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: NTOW01000013.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_13_length_125941_cov_35.3505, whole genome shotgun sequence (125940 bp)
Overview 1 RT 1: 79124-84598 bp Neighborhood of RT #1 [79124, 84642] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 COG3943 Feature: gene Location: 79124-81457 bp Feature: domain Description: Prim_Zn_Ribbon Location: 79214-79322 bp Feature: domain Description: Prim_Zn_Ribbon Location: 792 14-7932 2 bp Feature: domain Description: COG3378 Location: 79931-81446 bp Feature: domain Description: COG3378 Location: 79931-81446 bp Feature: gene Location: 81734-81868 bp Feature: gene Location: 82044-83675 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82359-82956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 359-82 956 bp Feature: domain Description: TIR_2 Location: 83280-83637 bp Feature: domain Description: TIR_2 Location: 832 80-83637 bp Feature: gene Location: 83913-84065 bp Feature: domain Description: Pox_D5 Location: 83916-84039 bp Feature: domain Description: Pox_D5 Location: 83916-84039 bp Feature: gene Location: 84496-84642 bp Feature: domain Description: COG3943 Location: 84499-84598 bp Feature: domain Description: COG3943 Location: 84499-84598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG3943 (Uncharacterized conserved protein )

Seq: NTOW01000002.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_2_length_286066_cov_35.6351, whole genome shotgun sequence (286066 bp)
Overview 1 RT 1: 238104-244948 bp Neighborhood of RT #1 [238104, 245205] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 238104-238409 bp Feature: gene Location: 239292-241568 bp Feature: domain Description: AAA_15 Location: 239325-240333 bp Feature: domain Description: AAA_15 Location: 23 93 25-2403 3 3 bp Feature: gene Location: 241683-242639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241866-242394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 241866-2423 94 bp Feature: gene Location: 243438-244556 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 244209-244380 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 244209-2443 80 bp Feature: gene Location: 244729-245205 bp Feature: domain Description: HTH_23 Location: 244807-244948 bp Feature: domain Description: HTH_23 Location: 244807-244948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: NTOW01000064.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_64_length_11664_cov_19.456, whole genome shotgun sequence (11664 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-97 bp Feature: gene Location: 291-602 bp Feature: domain Description: PRK10173 Location: 294-513 bp Feature: domain Description: PRK10173 Location: 294 -513 bp Feature: gene Location: 586-1035 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: NTOW01000073.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_73_length_7689_cov_25.8217, whole genome shotgun sequence (7689 bp)
Overview 1 RT 1: 5512-7441 bp Neighborhood of RT #1 [5512, 7686] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 5512-5916 bp Feature: domain Description: InsE Location: 5542-5878 bp Feature: domain Description: InsE Location: 5 5 42-5 878 bp Feature: gene Location: 5945-6301 bp Feature: domain Description: PHA02517 Location: 5948-6257 bp Feature: domain Description: PHA025 17 Location: 5 948-625 7 bp Feature: gene Location: 6418-7686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6436-7168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6436-7168 bp Feature: domain Description: GIIM Note: maturase Location: 7243-7441 bp Feature: domain Description: GIIM Note: maturase Location: 7243-7441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NTOW01000087.1 Escherichia coli strain MOD1-EC6181 MOD1-EC6181_87_length_3070_cov_41.9749, whole genome shotgun sequence (3070 bp)
Overview 1 RT 1: 609-2897 bp Neighborhood of RT #1 [609, 2956] PHA02517 InsE RVT-GII trans_reg_C Feature: gene Location: 609-1016 bp Feature: domain Description: PHA02517 Location: 681-1014 bp Feature: domain Description: PHA02517 Location: 6 81-1014 bp Feature: gene Location: 1152-1361 bp Feature: domain Description: InsE Location: 1164-1338 bp Feature: domain Description: InsE Location: 116 4-1338 bp Feature: gene Location: 1388-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1679-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 79-176 9 bp Feature: gene Location: 2015-2356 bp Feature: gene Location: 2654-2956 bp Feature: domain Description: trans_reg_C Location: 2702-2897 bp Feature: domain Description: trans_reg_C Location: 2702-2897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383), PHA02517 (putative transposase OrfB; Reviewed)