myRT

myRT report for GCA_002463565.1_ASM246356v1

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Seq: NTOY01000013.1 Escherichia coli strain MOD1-EC6117 MOD1-EC6117_13_length_126800_cov_34.7525, whole genome shotgun sequence (126800 bp)
Overview 1 RT 1: 117173-123204 bp Neighborhood of RT #1 [117173, 123204] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 117173-118093 bp Feature: domain Description: AbiEii Location: 117215-117956 bp Feature: domain Description: AbiEii Location: 1 1 721 5-1 1 7956 bp Feature: gene Location: 118080-118883 bp Feature: domain Description: AbiEi_3_N Location: 118113-118374 bp Feature: domain Description: AbiEi_3_N Location: 1 1 81 1 3-1 1 8374 bp Feature: domain Description: AbiEi_3 Location: 118386-118842 bp Feature: domain Description: AbiEi_3 Location: 1 1 8386-1 1 8842 bp Feature: gene Location: 119178-122387 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 119706-120195 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 9706-1 201 95 bp Feature: domain Description: nitrilase Location: 121701-122298 bp Feature: domain Description: nitrilase Location: 1 21 701 -1 22298 bp Feature: gene Location: 122548-122688 bp Feature: domain Description: Phage_ASH Location: 122575-122668 bp Feature: domain Description: Phage_ASH Location: 1 22575-1 22668 bp Feature: gene Location: 122734-123204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NTOY01000058.1 Escherichia coli strain MOD1-EC6117 MOD1-EC6117_58_length_26189_cov_37.8226, whole genome shotgun sequence (26189 bp)
Overview 1 RT 1: 15112-20102 bp Neighborhood of RT #1 [15112, 20104] DDE_Tnp_ISL3 DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 15112-15489 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15115-15448 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15115-15448 bp Feature: gene Location: 15741-16667 bp Feature: domain Description: DUF1281 Location: 15834-16362 bp Feature: domain Description: DUF12 81 Location: 15834-16362 bp Feature: domain Description: DUF1281_C Location: 16368-16608 bp Feature: domain Description: DUF12 81_C Location: 16368-16608 bp Feature: gene Location: 17171-18871 bp Feature: domain Description: RVT_N Location: 17225-17468 bp Feature: domain Description: RVT_N Location: 172 2 5-17468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17513-18149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17513-18149 bp Feature: domain Description: GIIM Note: maturase Location: 18200-18434 bp Feature: domain Description: GIIM Note: maturase Location: 182 00-18434 bp Feature: domain Description: HNHc Note: nucleases Location: 18665-18815 bp Feature: domain Description: HNHc Note: nucleases Location: 18665-18815 bp Feature: gene Location: 18908-19036 bp Feature: gene Location: 19238-20104 bp Feature: domain Description: PRK13699 Location: 19493-20102 bp Feature: domain Description: PRK13699 Location: 19493-2 0102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)