myRT

myRT report for GCA_002463705.1_ASM246370v1

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Seq: NTNY01000111.1 Escherichia coli strain MOD1-EC6240 MOD1-EC6240_111_length_3267_cov_214.734, whole genome shotgun sequence (3267 bp)
Overview 1 RT 1: 168-3125 bp Neighborhood of RT #1 [168, 3148] RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 168-1691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 -1 1 73 bp Feature: domain Description: GIIM Note: maturase Location: 1248-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1 248-1 446 bp Feature: gene Location: 2283-2495 bp Feature: domain Description: PHA02517 Location: 2286-2430 bp Feature: domain Description: PHA0251 7 Location: 2286-2430 bp Feature: gene Location: 2717-3148 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2723-2993 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2723-2993 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3014-3125 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 301 4-31 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NTNY01000023.1 Escherichia coli strain MOD1-EC6240 MOD1-EC6240_23_length_75213_cov_80.1842, whole genome shotgun sequence (75213 bp)
Overview 1 RT 1: 17044-21942 bp Neighborhood of RT #1 [17044, 21942] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 17044-18690 bp Feature: domain Description: groEL Location: 17050-18673 bp Feature: domain Description: groEL Location: 17050-18673 bp Feature: gene Location: 19264-19431 bp Feature: gene Location: 19802-21460 bp Feature: RT Description: RVT_N Location: 19853-20096 bp Feature: RT Description: RVT_N Location: 19853-2 0096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20141-20786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0141-2 0786 bp Feature: domain Description: GIIM Note: maturase Location: 20840-21071 bp Feature: domain Description: GIIM Note: maturase Location: 2 0840-2 1071 bp Feature: domain Description: HNHc Note: nucleases Location: 21284-21443 bp Feature: domain Description: HNHc Note: nucleases Location: 2 12 84-2 1443 bp Feature: gene Location: 21564-21788 bp Feature: domain Description: DUF2188 Location: 21582-21759 bp Feature: domain Description: DUF2 188 Location: 2 1582 -2 1759 bp Feature: gene Location: 21742-21942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)