myRT

myRT report for GCA_002463885.1_ASM246388v1

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Seq: NTPQ01000137.1 Escherichia coli strain MOD1-EC5067 MOD1-EC5067_137_length_2354_cov_457.374, whole genome shotgun sequence (2354 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1 624-1 858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NTPQ01000021.1 Escherichia coli strain MOD1-EC5067 MOD1-EC5067_21_length_78025_cov_107.546, whole genome shotgun sequence (78025 bp)
Overview 1 RT 1: 51210-55092 bp Neighborhood of RT #1 [51210, 55097] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51210-51668 bp Feature: domain Description: dut Location: 51216-51663 bp Feature: domain Description: dut Location: 512 16-51663 bp Feature: gene Location: 51775-52371 bp Feature: domain Description: slmA Location: 51781-52357 bp Feature: domain Description: slmA Location: 51781-52 357 bp Feature: gene Location: 52417-53376 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52552-53101 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 552 -53101 bp Feature: gene Location: 53674-54330 bp Feature: domain Description: pyrE Location: 53692-54325 bp Feature: domain Description: pyrE Location: 53692 -5432 5 bp Feature: gene Location: 54381-55097 bp Feature: domain Description: rph Location: 54384-55092 bp Feature: domain Description: rph Location: 54384-55092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NTPQ01000072.1 Escherichia coli strain MOD1-EC5067 MOD1-EC5067_72_length_12852_cov_95.0093, whole genome shotgun sequence (12852 bp)
Overview 1 RT 1: 3-2152 bp Neighborhood of RT #1 [3, 2157] RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 3-263 bp Feature: gene Location: 325-1248 bp Feature: RT Description: RVT_N Location: 373-616 bp Feature: RT Description: RVT_N Location: 3 73 -616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661-123 1 bp Feature: gene Location: 1275-1682 bp Feature: gene Location: 1846-2157 bp Feature: domain Description: TnpB_IS66 Location: 1873-2152 bp Feature: domain Description: TnpB_IS66 Location: 1873 -2152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII

Seq: NTPQ01000078.1 Escherichia coli strain MOD1-EC5067 MOD1-EC5067_78_length_11360_cov_80.7744, whole genome shotgun sequence (11360 bp)
Overview 1 RT 1: 114-2344 bp Neighborhood of RT #1 [114, 2344] RVT-GII GIIM PHA02517 Feature: gene Location: 114-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-94 2 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1215 bp Feature: domain Description: GIIM Note: maturase Location: 1017-1215 bp Feature: gene Location: 1577-2023 bp Feature: domain Description: PHA02517 Location: 1580-2021 bp Feature: domain Description: PHA02517 Location: 1580-2021 bp Feature: gene Location: 2081-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)