myRT

myRT report for GCA_002464345.1_ASM246434v1

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Seq: NXMG01000103.1 Escherichia coli strain MOD1-EC6912 EC6912_103_length_16759_cov_46.91, whole genome shotgun sequence (16759 bp)
Overview 1 RT 1: 9791-13673 bp Neighborhood of RT #1 [9791, 13678] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9791-10249 bp Feature: domain Description: dut Location: 9797-10244 bp Feature: domain Description: dut Location: 9797-1 0244 bp Feature: gene Location: 10356-10952 bp Feature: domain Description: slmA Location: 10362-10938 bp Feature: domain Description: slmA Location: 1 0362-1 0938 bp Feature: gene Location: 10998-11957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11133-11682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 33-1 1 682 bp Feature: gene Location: 12255-12911 bp Feature: domain Description: pyrE Location: 12273-12906 bp Feature: domain Description: pyrE Location: 1 2273-1 2906 bp Feature: gene Location: 12962-13678 bp Feature: domain Description: rph Location: 12965-13673 bp Feature: domain Description: rph Location: 1 2965-1 3673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NXMG01000171.1 Escherichia coli strain MOD1-EC6912 EC6912_171_length_6690_cov_30.56, whole genome shotgun sequence (6690 bp)
Overview 1 RT 1: 1536-4937 bp Neighborhood of RT #1 [1536, 4937] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1536-2189 bp Feature: domain Description: PRK13699 Location: 1581-2187 bp Feature: domain Description: PRK13699 Location: 1581-2 187 bp Feature: gene Location: 2296-2496 bp Feature: gene Location: 2769-4469 bp Feature: domain Description: RVT_N Location: 2823-3066 bp Feature: domain Description: RVT_N Location: 2 82 3-3066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111-3747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111-3747 bp Feature: domain Description: GIIM Note: maturase Location: 3798-4032 bp Feature: domain Description: GIIM Note: maturase Location: 3798-4032 bp Feature: domain Description: HNHc Note: nucleases Location: 4263-4413 bp Feature: domain Description: HNHc Note: nucleases Location: 42 63-4413 bp Feature: gene Location: 4594-4758 bp Feature: gene Location: 4785-4937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NXMG01000025.1 Escherichia coli strain MOD1-EC6912 EC6912_25_length_56874_cov_48.34, whole genome shotgun sequence (56874 bp)
Overview 1 RT 1: 29802-34162 bp Neighborhood of RT #1 [29802, 34164] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 29802-30902 bp Feature: domain Description: D Location: 29808-30891 bp Feature: domain Description: D Location: 29808-3 0891 bp Feature: gene Location: 30993-31211 bp Feature: domain Description: PRK09678 Location: 30996-31194 bp Feature: domain Description: PRK09678 Location: 3 0996-3 1194 bp Feature: gene Location: 31615-32388 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31750-32203 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3 1750-3 2203 bp Feature: gene Location: 33074-33556 bp Feature: domain Description: SmpB Location: 33104-33551 bp Feature: domain Description: SmpB Location: 3 3 104-3 3 551 bp Feature: gene Location: 33688-34164 bp Feature: domain Description: PRK10724 Location: 33694-34162 bp Feature: domain Description: PRK10724 Location: 3 3 694-3 4162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NXMG01000095.1 Escherichia coli strain MOD1-EC6912 EC6912_95_length_12461_cov_68.41, whole genome shotgun sequence (12461 bp)
Overview 1 RT 1: 1-1819 bp Neighborhood of RT #1 [1, 1824] RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 1-915 bp Feature: domain Description: RVT_N Location: 49-292 bp Feature: domain Description: RVT_N Location: 4 9-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-904 bp Feature: gene Location: 942-1349 bp Feature: gene Location: 1513-1824 bp Feature: domain Description: TnpB_IS66 Location: 1540-1819 bp Feature: domain Description: TnpB_IS66 Location: 154 0-1819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)

Seq: NXMG01000096.1 Escherichia coli strain MOD1-EC6912 EC6912_96_length_11244_cov_80.16, whole genome shotgun sequence (11244 bp)
Overview 1 RT 1: 8959-10944 bp Neighborhood of RT #1 [8959, 11189] PHA02517 RVT-GII GIIM Feature: gene Location: 8959-9222 bp Feature: gene Location: 9280-9726 bp Feature: domain Description: PHA02517 Location: 9283-9724 bp Feature: domain Description: PHA025 17 Location: 9283-9724 bp Feature: gene Location: 9843-11189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9939-10671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9939-10671 bp Feature: domain Description: GIIM Note: maturase Location: 10746-10944 bp Feature: domain Description: GIIM Note: maturase Location: 10746-10944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)