myRT

myRT report for GCA_002464465.1_ASM246446v1

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Seq: NXMN01000010.1 Escherichia coli strain MOD1-EC5266 MOD1-EC5266_10_length_156233_cov_38.8167, whole genome shotgun sequence (156233 bp)
Overview 1 RT 1: 101393-105275 bp Neighborhood of RT #1 [101393, 105280] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 101393-102109 bp Feature: domain Description: rph Location: 101396-102104 bp Feature: domain Description: rph Location: 1 01 396-1 021 04 bp Feature: gene Location: 102160-102816 bp Feature: domain Description: pyrE Location: 102178-102811 bp Feature: domain Description: pyrE Location: 1 021 78-1 0281 1 bp Feature: gene Location: 103114-104073 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103249-103798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 03249-1 03798 bp Feature: gene Location: 104119-104715 bp Feature: domain Description: slmA Location: 104125-104701 bp Feature: domain Description: slmA Location: 1 041 25-1 04701 bp Feature: gene Location: 104822-105280 bp Feature: domain Description: dut Location: 104828-105275 bp Feature: domain Description: dut Location: 1 04828-1 05275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NXMN01000072.1 Escherichia coli strain MOD1-EC5266 MOD1-EC5266_72_length_14548_cov_40.7047, whole genome shotgun sequence (14548 bp)
Overview 1 RT 1: 133-3284 bp Neighborhood of RT #1 [133, 3295] PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 133-612 bp Feature: domain Description: PHA02517 Location: 193-547 bp Feature: domain Description: PHA02 517 Location: 193-547 bp Feature: gene Location: 1204-2727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1477-2209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1477-2 2 09 bp Feature: domain Description: GIIM Note: maturase Location: 2284-2482 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 84-2 482 bp Feature: gene Location: 2892-3056 bp Feature: domain Description: PHA02517 Location: 2895-2985 bp Feature: domain Description: PHA02 517 Location: 2 895-2 985 bp Feature: gene Location: 3089-3295 bp Feature: domain Description: PHA02517 Location: 3092-3284 bp Feature: domain Description: PHA02 517 Location: 3092 -32 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)