myRT

myRT report for GCA_002464515.1_ASM246451v1

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Seq: NXMO01000003.1 Escherichia coli strain MOD1-EC5265 MOD1-EC5265_3_length_269101_cov_47.5796, whole genome shotgun sequence (269100 bp)
Overview 1 RT 1: 5252-11979 bp Neighborhood of RT #1 [5252, 11996] PRK09692 RVT-UG7 Psu Feature: gene Location: 5252-7024 bp Feature: gene Location: 7579-8763 bp Feature: domain Description: PRK09692 Location: 7585-8740 bp Feature: domain Description: PRK09692 Location: 7585-8740 bp Feature: gene Location: 8756-10384 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9164-9593 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 91 64-9593 bp Feature: gene Location: 10381-11121 bp Feature: gene Location: 11424-11996 bp Feature: domain Description: Psu Location: 11442-11979 bp Feature: domain Description: Psu Location: 1 1 442-1 1 979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: NXMO01000044.1 Escherichia coli strain MOD1-EC5265 MOD1-EC5265_44_length_14079_cov_52.4546, whole genome shotgun sequence (14079 bp)
Overview 1 RT 1: 10335-13506 bp Neighborhood of RT #1 [10335, 13508] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 10335-11018 bp Feature: domain Description: PRK10276 Location: 10638-11001 bp Feature: domain Description: PRK102 76 Location: 10638-11001 bp Feature: gene Location: 11072-11674 bp Feature: gene Location: 11649-12659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11655-12267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11655-12 2 67 bp Feature: gene Location: 12811-13086 bp Feature: domain Description: InsA Location: 12814-13078 bp Feature: domain Description: InsA Location: 12 814-13078 bp Feature: gene Location: 13005-13508 bp Feature: domain Description: DDE_Tnp_IS1 Location: 13116-13506 bp Feature: domain Description: DDE_Tnp_IS1 Location: 13116-13506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: NXMO01000046.1 Escherichia coli strain MOD1-EC5265 MOD1-EC5265_46_length_13768_cov_38.1195, whole genome shotgun sequence (13768 bp)
Overview 1 RT 1: 2823-6426 bp Neighborhood of RT #1 [2823, 6551] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2823-3080 bp Feature: gene Location: 3111-3386 bp Feature: gene Location: 3960-5627 bp Feature: domain Description: RVT_N Location: 4008-4245 bp Feature: domain Description: RVT_N Location: 4008-4245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296-4938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296-493 8 bp Feature: domain Description: GIIM Note: maturase Location: 4989-5223 bp Feature: domain Description: GIIM Note: maturase Location: 4989-5223 bp Feature: domain Description: HNHc Note: nucleases Location: 5433-5592 bp Feature: domain Description: HNHc Note: nucleases Location: 543 3 -5592 bp Feature: gene Location: 5941-6132 bp Feature: gene Location: 6129-6551 bp Feature: domain Description: DUF1380 Location: 6132-6426 bp Feature: domain Description: DUF13 80 Location: 613 2-6426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)