myRT

myRT report for GCA_002464975.1_ASM246497v1

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Seq: NJJC01000010.1 Escherichia coli strain MOD1-EC915 MOD1-EC915_10_length_147907_cov_28.6831, whole genome shotgun sequence (147907 bp)
Overview 1 RT 1: 135440-139758 bp Neighborhood of RT #1 [135440, 139775] Psu RVT-UG17 SLATT_5 PRK09692 Feature: gene Location: 135440-136012 bp Feature: domain Description: Psu Location: 135458-135995 bp Feature: domain Description: Psu Location: 1 35458-1 35995 bp Feature: gene Location: 136065-136214 bp Feature: gene Location: 136335-137744 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 136572-137184 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 36572-1 371 84 bp Feature: gene Location: 137843-138580 bp Feature: domain Description: SLATT_5 Location: 137942-138548 bp Feature: domain Description: SLATT_5 Location: 1 37942-1 38548 bp Feature: gene Location: 138597-139775 bp Feature: domain Description: PRK09692 Location: 138606-139758 bp Feature: domain Description: PRK09692 Location: 1 38606-1 39758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG17, SLATT_5 (pfam18160), PRK09692 (Integrase; provisional)

Seq: NJJC01000060.1 Escherichia coli strain MOD1-EC915 MOD1-EC915_60_length_15845_cov_48.7777, whole genome shotgun sequence (15845 bp)
Overview 1 RT 1: 96-9234 bp Neighborhood of RT #1 [96, 9239] TnpB_IS66 RVT_N RVT-GII YkfC HNHc LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C IS285 RVT-UG4 AfaD-like PRK15223 Feature: gene Location: 96-407 bp Feature: domain Description: TnpB_IS66 Location: 123-402 bp Feature: domain Description: TnpB_IS66 Location: 12 3-402 bp Feature: gene Location: 614-754 bp Feature: gene Location: 1005-2675 bp Feature: domain Description: RVT_N Location: 1053-1296 bp Feature: domain Description: RVT_N Location: 1053-12 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341-1983 bp Feature: domain Description: YkfC Location: 2115-2355 bp Feature: domain Description: YkfC Location: 2 115-2 355 bp Feature: domain Description: HNHc Note: nucleases Location: 2481-2640 bp Feature: domain Description: HNHc Note: nucleases Location: 2 481-2 640 bp Feature: gene Location: 2818-4359 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2956-3181 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 956-3181 bp Feature: domain Description: zf-IS66 Location: 3202-3334 bp Feature: domain Description: zf-IS66 Location: 32 02 -3334 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3379-4234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3379-42 34 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4255-4336 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42 55-4336 bp Feature: gene Location: 4441-4593 bp Feature: domain Description: IS285 Location: 4444-4567 bp Feature: domain Description: IS2 85 Location: 4444-4567 bp Feature: gene Location: 5431-5928 bp Feature: gene Location: 5980-6186 bp Feature: gene Location: 6286-6945 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6619-6943 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6619-6943 bp Feature: gene Location: 7105-7554 bp Feature: domain Description: AfaD-like Location: 7189-7531 bp Feature: domain Description: AfaD-like Location: 7189-7531 bp Feature: gene Location: 7569-9239 bp Feature: domain Description: PRK15223 Location: 7575-9234 bp Feature: domain Description: PRK152 2 3 Location: 7575-92 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), IS285 (COG3328)
RVT-UG4, AfaD-like (cd18776), PRK15223 (fimbrial biogenesis outer membrane usher protein)

Seq: NJJC01000095.1 Escherichia coli strain MOD1-EC915 MOD1-EC915_95_length_2343_cov_131.857, whole genome shotgun sequence (2343 bp)
Overview 1 RT 1: 2-2226 bp Neighborhood of RT #1 [2, 2261] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 594-2261 bp Feature: domain Description: RVT_N Location: 642-882 bp Feature: domain Description: RVT_N Location: 642-882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1572 bp Feature: domain Description: GIIM Note: maturase Location: 1623-1857 bp Feature: domain Description: GIIM Note: maturase Location: 1623 -1857 bp Feature: domain Description: HNHc Note: nucleases Location: 2067-2226 bp Feature: domain Description: HNHc Note: nucleases Location: 2067-2226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)