myRT

myRT report for GCA_002465095.1_ASM246509v1

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Seq: NJJO01000036.1 Escherichia coli strain MOD1-EC896 MOD1-EC896_36_length_40160_cov_43.4405, whole genome shotgun sequence (40160 bp)
Overview 1 RT 1: 578-3263 bp Neighborhood of RT #1 [578, 3263] FaeA RVT-UG4 Feature: gene Location: 578-964 bp Feature: domain Description: FaeA Location: 776-956 bp Feature: domain Description: FaeA Location: 776-956 bp Feature: gene Location: 1070-1642 bp Feature: gene Location: 1680-2378 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1683-2103 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 683-21 03 bp Feature: gene Location: 2410-2562 bp Feature: gene Location: 2736-3263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FaeA (pfam04703), RVT-UG4

Seq: NJJO01000058.1 Escherichia coli strain MOD1-EC896 MOD1-EC896_58_length_10144_cov_6.09665, whole genome shotgun sequence (10144 bp)
Overview 1 RT 1: 6076-9878 bp Neighborhood of RT #1 [6076, 9878] IS285 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 6076-7284 bp Feature: domain Description: IS285 Location: 6106-7273 bp Feature: domain Description: IS2 85 Location: 6106-72 73 bp Feature: gene Location: 7435-7623 bp Feature: gene Location: 7656-9329 bp Feature: domain Description: RVT_N Location: 7704-7947 bp Feature: domain Description: RVT_N Location: 7704-7947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7992-8637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7992 -8637 bp Feature: domain Description: GIIM Note: maturase Location: 8691-8922 bp Feature: domain Description: GIIM Note: maturase Location: 8691-892 2 bp Feature: domain Description: HNHc Note: nucleases Location: 9123-9282 bp Feature: domain Description: HNHc Note: nucleases Location: 912 3-92 82 bp Feature: gene Location: 9486-9620 bp Feature: gene Location: 9684-9878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)