myRT

myRT report for GCA_002465395.1_ASM246539v1

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Seq: NJJH01000011.1 Escherichia coli strain MOD1-EC905 MOD1-EC905_11_length_157093_cov_39.2766, whole genome shotgun sequence (157093 bp)
Overview 1 RT 1: 101402-105284 bp Neighborhood of RT #1 [101402, 105289] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 101402-102118 bp Feature: domain Description: rph Location: 101405-102113 bp Feature: domain Description: rph Location: 1 01 405-1 021 1 3 bp Feature: gene Location: 102169-102825 bp Feature: domain Description: pyrE Location: 102187-102820 bp Feature: domain Description: pyrE Location: 1 021 87-1 02820 bp Feature: gene Location: 103123-104082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103258-103807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 03258-1 03807 bp Feature: gene Location: 104128-104724 bp Feature: domain Description: slmA Location: 104134-104710 bp Feature: domain Description: slmA Location: 1 041 34-1 0471 0 bp Feature: gene Location: 104831-105289 bp Feature: domain Description: dut Location: 104837-105284 bp Feature: domain Description: dut Location: 1 04837-1 05284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NJJH01000028.1 Escherichia coli strain MOD1-EC905 MOD1-EC905_28_length_50222_cov_65.9131, whole genome shotgun sequence (50220 bp)
Overview 1 RT 1: 39336-47183 bp Neighborhood of RT #1 [39336, 47185] HTH_23 InsE RVT-GII GIIM ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 39336-39914 bp Feature: gene Location: 40446-41093 bp Feature: domain Description: HTH_23 Location: 40479-40587 bp Feature: domain Description: HTH_2 3 Location: 40479-40587 bp Feature: domain Description: InsE Location: 40719-41073 bp Feature: domain Description: InsE Location: 40719-41073 bp Feature: gene Location: 41194-42039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41197-41599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41197-41599 bp Feature: domain Description: GIIM Note: maturase Location: 41647-41878 bp Feature: domain Description: GIIM Note: maturase Location: 41647-41878 bp Feature: gene Location: 42222-42416 bp Feature: gene Location: 43070-47185 bp Feature: domain Description: ESPR Location: 43073-43139 bp Feature: domain Description: ESPR Location: 43073-43139 bp Feature: domain Description: Peptidase_S6 Location: 43229-45392 bp Feature: domain Description: Peptidase_S6 Location: 432 2 9-45392 bp Feature: domain Description: autotrans_barl Location: 45956-47183 bp Feature: domain Description: autotrans_barl Location: 45956-47183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: NJJH01000003.1 Escherichia coli strain MOD1-EC905 MOD1-EC905_3_length_268942_cov_38.9396, whole genome shotgun sequence (268942 bp)
Overview 1 RT 1: 38664-42416 bp Neighborhood of RT #1 [38664, 42622] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 38664-38960 bp Feature: gene Location: 38980-39150 bp Feature: gene Location: 39370-40305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39472-40066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 9472-40066 bp Feature: gene Location: 40302-41957 bp Feature: domain Description: COG3950 Location: 40458-41904 bp Feature: domain Description: COG3 950 Location: 40458-41904 bp Feature: gene Location: 41954-42622 bp Feature: domain Description: TIGR02646 Location: 42020-42416 bp Feature: domain Description: TIGR02646 Location: 42020-42416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)