myRT

myRT report for GCA_002465575.1_ASM246557v1

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Seq: NJJF01000029.1 Escherichia coli strain MOD1-EC911 MOD1-EC911_29_length_42857_cov_18.1557, whole genome shotgun sequence (42857 bp)
Overview 1 RT 1: 32320-37385 bp Neighborhood of RT #1 [32320, 37385] RVT_N RVT-GII GIIM HNHc ArdA Feature: gene Location: 32320-32754 bp Feature: gene Location: 33044-33328 bp Feature: gene Location: 33902-35569 bp Feature: RT Description: RVT_N Location: 33950-34190 bp Feature: RT Description: RVT_N Location: 33950-341 90 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34238-34880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34238-34880 bp Feature: domain Description: GIIM Note: maturase Location: 34931-35165 bp Feature: domain Description: GIIM Note: maturase Location: 34931 -351 65 bp Feature: domain Description: HNHc Note: nucleases Location: 35375-35534 bp Feature: domain Description: HNHc Note: nucleases Location: 35375-35534 bp Feature: gene Location: 35826-36710 bp Feature: domain Description: ArdA Location: 36234-36699 bp Feature: domain Description: ArdA Location: 36234-36699 bp Feature: gene Location: 36789-37385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ArdA (pfam07275)

Seq: NJJF01000002.1 Escherichia coli strain MOD1-EC911 MOD1-EC911_2_length_349859_cov_30.9999, whole genome shotgun sequence (349859 bp)
Overview 1 RT 1: 272319-276929 bp Neighborhood of RT #1 [272319, 276929] HTH_1 PBP2_CrgA_like_5 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 272319-273203 bp Feature: domain Description: HTH_1 Location: 272343-272517 bp Feature: domain Description: HTH_1 Location: 2 72 343-2 72 517 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272598-273195 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 72 598-2 73195 bp Feature: gene Location: 273787-274002 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273790-273976 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 73790-2 73976 bp Feature: gene Location: 274866-275798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274968-275559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 74968-2 75559 bp Feature: gene Location: 275785-276753 bp Feature: gene Location: 276786-276929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons