myRT

myRT report for GCA_002465855.1_ASM246585v1

Download annotations/find similar RTs

Seq: NJLA01000023.1 Escherichia coli strain MOD1-EC675 MOD1-EC675_23_length_83854_cov_61.8708, whole genome shotgun sequence (83854 bp)
Overview 1 RT 1: 29054-33194 bp Neighborhood of RT #1 [29054, 33895] PRK09692 RVT-Retrons ABC_ATPase Relaxase Feature: gene Location: 29054-29392 bp Feature: domain Description: PRK09692 Location: 29063-29384 bp Feature: domain Description: PRK09692 Location: 29063-29384 bp Feature: gene Location: 29456-29662 bp Feature: gene Location: 30019-30969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30166-30694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 301 66-30694 bp Feature: gene Location: 30966-32330 bp Feature: domain Description: ABC_ATPase Location: 31014-31722 bp Feature: domain Description: ABC_ATPase Location: 31 01 4-31 722 bp Feature: gene Location: 32435-33895 bp Feature: domain Description: Relaxase Location: 32462-33194 bp Feature: domain Description: Relaxase Location: 32462-331 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, ABC_ATPase (pfam09818), Relaxase (pfam03432)

Seq: NJLA01000024.1 Escherichia coli strain MOD1-EC675 MOD1-EC675_24_length_54745_cov_43.1543, whole genome shotgun sequence (54745 bp)
Overview 1 RT 1: 53711-54587 bp Neighborhood of RT #1 [53711, 54742] PRK10173 PRK10173 RVT-GII Feature: gene Location: 53711-54160 bp Feature: domain Description: PRK10173 Location: 53714-54152 bp Feature: domain Description: PRK10173 Location: 53714-54152 bp Feature: gene Location: 54144-54455 bp Feature: domain Description: PRK10173 Location: 54147-54366 bp Feature: domain Description: PRK10173 Location: 54147-54366 bp Feature: gene Location: 54494-54742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54512-54587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54512 -54587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: NJLA01000081.1 Escherichia coli strain MOD1-EC675 MOD1-EC675_81_length_1815_cov_51.1899, whole genome shotgun sequence (1815 bp)
Overview 1 RT 1: 71-1567 bp Neighborhood of RT #1 [71, 1812] PHA02517 RVT-GII GIIM Feature: gene Location: 71-427 bp Feature: domain Description: PHA02517 Location: 74-383 bp Feature: domain Description: PHA02517 Location: 74-3 83 bp Feature: gene Location: 544-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562-1294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562-1294 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1567 bp Feature: domain Description: GIIM Note: maturase Location: 13 69-1567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NJLA01000091.1 Escherichia coli strain MOD1-EC675 MOD1-EC675_91_length_1329_cov_102.9, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 3-1263 bp Neighborhood of RT #1 [3, 1328] RVT-GII PHA02517 Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 921-1328 bp Feature: domain Description: PHA02517 Location: 924-1263 bp Feature: domain Description: PHA02517 Location: 924 -1263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)