myRT

myRT report for GCA_002466085.1_ASM246608v1

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Seq: NJLO01000013.1 Escherichia coli strain MOD1-EC581 MOD1-EC581_13_length_139475_cov_38.2333, whole genome shotgun sequence (139475 bp)
Overview 1 RT 1: 124343-129903 bp Neighborhood of RT #1 [124343, 129908] RVT-Retrons Q P Feature: gene Location: 124343-124678 bp Feature: gene Location: 124941-125102 bp Feature: gene Location: 125135-127075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125459-126083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 25459-1 26083 bp Feature: gene Location: 127117-128142 bp Feature: domain Description: Q Location: 127120-128137 bp Feature: domain Description: Q Location: 1 271 20-1 281 37 bp Feature: gene Location: 128142-129908 bp Feature: domain Description: P Location: 128169-129903 bp Feature: domain Description: P Location: 1 281 69-1 29903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: NJLO01000023.1 Escherichia coli strain MOD1-EC581 MOD1-EC581_23_length_77962_cov_45.3252, whole genome shotgun sequence (77962 bp)
Overview 1 RT 1: 62165-64585 bp Neighborhood of RT #1 [62165, 64585] HTH_XRE RVT-Retrons Feature: gene Location: 62165-62557 bp Feature: gene Location: 62594-62902 bp Feature: domain Description: HTH_XRE Location: 62606-62771 bp Feature: domain Description: HTH_XRE Location: 62 606-62 771 bp Feature: gene Location: 62880-63830 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63060-63603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63060-63603 bp Feature: gene Location: 63955-64392 bp Feature: gene Location: 64391-64585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NJLO01000046.1 Escherichia coli strain MOD1-EC581 MOD1-EC581_46_length_14986_cov_39.2319, whole genome shotgun sequence (14986 bp)
Overview 1 RT 1: 11331-14717 bp Neighborhood of RT #1 [11331, 14717] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 11331-11981 bp Feature: domain Description: TIGR02646 Location: 11397-11796 bp Feature: domain Description: TIGR02646 Location: 113 97-11796 bp Feature: gene Location: 11984-13636 bp Feature: domain Description: COG3950 Location: 12182-13601 bp Feature: domain Description: COG3 950 Location: 12182-13 601 bp Feature: gene Location: 13633-14568 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13735-14335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 73 5-143 3 5 bp Feature: gene Location: 14583-14717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: NJLO01000005.1 Escherichia coli strain MOD1-EC581 MOD1-EC581_5_length_240213_cov_35.8771, whole genome shotgun sequence (240213 bp)
Overview 1 RT 1: 235610-240212 bp Neighborhood of RT #1 [235610, 240211] PRK13889 RVT-UG16 COG4584 Feature: gene Location: 235610-235741 bp Feature: gene Location: 235774-237270 bp Feature: domain Description: PRK13889 Location: 235777-236380 bp Feature: domain Description: PRK13889 Location: 235777-236380 bp Feature: gene Location: 237403-238887 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 237766-238174 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 237766-238174 bp Feature: gene Location: 238987-239481 bp Feature: gene Location: 239540-240211 bp Feature: domain Description: COG4584 Location: 239543-240212 bp Feature: domain Description: COG4 584 Location: 23954 3-24 0212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-UG16, COG4584 (Transposase )