myRT

myRT report for GCA_002466125.1_ASM246612v1

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Seq: NJLR01000114.1 Escherichia coli strain MOD1-EC565 MOD1-EC565_114_length_2272_cov_301.337, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NJLR01000018.1 Escherichia coli strain MOD1-EC565 MOD1-EC565_18_length_101635_cov_48.587, whole genome shotgun sequence (101635 bp)
Overview 1 RT 1: 93441-101604 bp Neighborhood of RT #1 [93441, 101604] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 93441-96023 bp Feature: domain Description: mutS1 Location: 93492-96012 bp Feature: domain Description: mutS1 Location: 93492 -96012 bp Feature: gene Location: 96168-97628 bp Feature: domain Description: INT_Rci_Hp1_C Location: 96543-96750 bp Feature: domain Description: INT_Rci_Hp1_C Location: 96543-96750 bp Feature: domain Description: INT_P4_C Location: 96969-97506 bp Feature: domain Description: INT_P4_C Location: 96969-97506 bp Feature: gene Location: 98884-100902 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 99454-99904 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 99454-99904 bp Feature: gene Location: 101329-101604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8

Seq: NJLR01000006.1 Escherichia coli strain MOD1-EC565 MOD1-EC565_6_length_173879_cov_45.8152, whole genome shotgun sequence (173879 bp)
Overview 1 RT 1: 154420-162231 bp Neighborhood of RT #1 [154420, 162236] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 154420-156696 bp Feature: domain Description: Phage_GPA Location: 154819-155806 bp Feature: domain Description: Phage_GPA Location: 154819-155806 bp Feature: gene Location: 156758-157018 bp Feature: gene Location: 157184-158728 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 157601-158054 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 157601-158054 bp Feature: gene Location: 158923-159069 bp Feature: gene Location: 159071-159211 bp Feature: gene Location: 159279-160469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159429-160011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159429-160011 bp Feature: gene Location: 160644-161174 bp Feature: gene Location: 161217-162236 bp Feature: domain Description: Q Location: 161220-162231 bp Feature: domain Description: Q Location: 161220-16223 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)