myRT

myRT report for GCA_002466675.1_ASM246667v1

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Seq: NJNB01000100.1 Escherichia coli strain MOD1-EC267 MOD1-EC267_100_length_11268_cov_82.9645, whole genome shotgun sequence (11268 bp)
Overview 1 RT 1: 5159-11003 bp Neighborhood of RT #1 [5159, 11152] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 5159-5425 bp Feature: gene Location: 5661-5795 bp Feature: gene Location: 5952-7625 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: domain Description: GIIM Note: maturase Location: 6987-7218 bp Feature: domain Description: GIIM Note: maturase Location: 6987-721 8 bp Feature: domain Description: HNHc Note: nucleases Location: 7419-7578 bp Feature: domain Description: HNHc Note: nucleases Location: 741 9-7578 bp Feature: gene Location: 7658-7879 bp Feature: gene Location: 7937-8131 bp Feature: gene Location: 8647-9072 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: gene Location: 9091-9744 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-9712 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-971 2 bp Feature: gene Location: 9770-9973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: gene Location: 10034-10390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10043-10364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0043-1 0364 bp Feature: gene Location: 10484-11152 bp Feature: domain Description: HTH_23 Location: 10592-10679 bp Feature: domain Description: HTH_23 Location: 1 0592-1 0679 bp Feature: domain Description: InsE Location: 10808-11003 bp Feature: domain Description: InsE Location: 1 0808-1 1 003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963)

Seq: NJNB01000130.1 Escherichia coli strain MOD1-EC267 MOD1-EC267_130_length_6371_cov_96.885, whole genome shotgun sequence (6371 bp)
Overview 1 RT 1: 129-2715 bp Neighborhood of RT #1 [129, 2729] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 129-260 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-2 34 bp Feature: gene Location: 738-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 4-1578 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: gene Location: 2071-2217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 083-2 194 bp Feature: gene Location: 2244-2729 bp Feature: domain Description: COG3547 Location: 2262-2715 bp Feature: domain Description: COG3547 Location: 2 2 62 -2 715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJNB01000140.1 Escherichia coli strain MOD1-EC267 MOD1-EC267_140_length_5119_cov_95.0837, whole genome shotgun sequence (5119 bp)
Overview 1 RT 1: 328-4639 bp Neighborhood of RT #1 [328, 4641] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 328-549 bp Feature: domain Description: Tra5 Location: 340-532 bp Feature: domain Description: Tra5 Location: 3 40-53 2 bp Feature: gene Location: 562-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1519 bp Feature: gene Location: 1988-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994-2138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994-213 8 bp Feature: domain Description: GIIM Note: maturase Location: 2222-2438 bp Feature: domain Description: GIIM Note: maturase Location: 2222-243 8 bp Feature: gene Location: 2868-3110 bp Feature: gene Location: 3022-4641 bp Feature: domain Description: ushA Location: 3037-4639 bp Feature: domain Description: ushA Location: 3 03 7-463 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJNB01000198.1 Escherichia coli strain MOD1-EC267 MOD1-EC267_198_length_2194_cov_10.8833, whole genome shotgun sequence (2194 bp)
Overview 1 RT 1: 74-452 bp Neighborhood of RT #1 [74, 2191] RVT-UG5 Feature: gene Location: 74-2191 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 77-452 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 77-4 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: NJNB01000020.1 Escherichia coli strain MOD1-EC267 MOD1-EC267_20_length_79853_cov_41.4173, whole genome shotgun sequence (79853 bp)
Overview 1 RT 1: 35927-39807 bp Neighborhood of RT #1 [35927, 39812] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35927-36643 bp Feature: domain Description: rph Location: 35930-36638 bp Feature: domain Description: rph Location: 35 930-36638 bp Feature: gene Location: 36694-37350 bp Feature: domain Description: pyrE Location: 36712-37345 bp Feature: domain Description: pyrE Location: 36712-37345 bp Feature: gene Location: 37646-38605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37781-38330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37781-38330 bp Feature: gene Location: 38651-39247 bp Feature: domain Description: slmA Location: 38657-39233 bp Feature: domain Description: slmA Location: 3865 7-39233 bp Feature: gene Location: 39354-39812 bp Feature: domain Description: dut Location: 39360-39807 bp Feature: domain Description: dut Location: 39360-39807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)