myRT

myRT report for GCA_002466745.1_ASM246674v1

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Seq: NJNJ01000014.1 Escherichia coli strain MOD1-EC102 MOD1-EC102_14_length_116030_cov_39.8744, whole genome shotgun sequence (116030 bp)
Overview 1 RT 1: 9779-13661 bp Neighborhood of RT #1 [9779, 13666] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9779-10237 bp Feature: domain Description: dut Location: 9785-10232 bp Feature: domain Description: dut Location: 9785-1 0232 bp Feature: gene Location: 10344-10940 bp Feature: domain Description: slmA Location: 10350-10926 bp Feature: domain Description: slmA Location: 1 0350-1 0926 bp Feature: gene Location: 10986-11945 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11121-11670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 21 -1 1 670 bp Feature: gene Location: 12243-12899 bp Feature: domain Description: pyrE Location: 12261-12894 bp Feature: domain Description: pyrE Location: 1 2261 -1 2894 bp Feature: gene Location: 12950-13666 bp Feature: domain Description: rph Location: 12953-13661 bp Feature: domain Description: rph Location: 1 2953-1 3661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NJNJ01000016.1 Escherichia coli strain MOD1-EC102 MOD1-EC102_16_length_98011_cov_35.2689, whole genome shotgun sequence (98011 bp)
Overview 1 RT 1: 23559-27302 bp Neighborhood of RT #1 [23559, 27313] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23559-24041 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 2 3589-2 4036 bp Feature: gene Location: 24175-24342 bp Feature: gene Location: 24727-25500 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4862 -2 5315 bp Feature: gene Location: 25904-26122 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 2 5907-2 6105 bp Feature: gene Location: 26213-27313 bp Feature: domain Description: D Location: 26219-27302 bp Feature: domain Description: D Location: 2 62 19-2 7302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NJNJ01000046.1 Escherichia coli strain MOD1-EC102 MOD1-EC102_46_length_23995_cov_15.6269, whole genome shotgun sequence (23995 bp)
Overview 1 RT 1: 11251-13892 bp Neighborhood of RT #1 [11251, 13892] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 11251-11451 bp Feature: gene Location: 11565-11699 bp Feature: gene Location: 11724-13424 bp Feature: domain Description: RVT_N Location: 11778-12021 bp Feature: domain Description: RVT_N Location: 11778-12021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12066-12702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12066-12702 bp Feature: domain Description: GIIM Note: maturase Location: 12753-12987 bp Feature: domain Description: GIIM Note: maturase Location: 12753 -12987 bp Feature: domain Description: HNHc Note: nucleases Location: 13218-13368 bp Feature: domain Description: HNHc Note: nucleases Location: 13 218-13 3 68 bp Feature: gene Location: 13549-13713 bp Feature: gene Location: 13740-13892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NJNJ01000051.1 Escherichia coli strain MOD1-EC102 MOD1-EC102_51_length_21284_cov_21.7018, whole genome shotgun sequence (21284 bp)
Overview 1 RT 1: 8005-10584 bp Neighborhood of RT #1 [8005, 10589] InsE RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 8005-8424 bp Feature: domain Description: InsE Location: 8020-8404 bp Feature: domain Description: InsE Location: 8020-84 04 bp Feature: gene Location: 8279-8695 bp Feature: gene Location: 8757-9680 bp Feature: domain Description: RVT_N Location: 8805-9048 bp Feature: domain Description: RVT_N Location: 8805-904 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9093-9663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9093-9663 bp Feature: gene Location: 9707-10114 bp Feature: gene Location: 10278-10589 bp Feature: domain Description: TnpB_IS66 Location: 10305-10584 bp Feature: domain Description: TnpB_IS66 Location: 10305-10584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717)

Seq: NJNJ01000061.1 Escherichia coli strain MOD1-EC102 MOD1-EC102_61_length_11110_cov_20.2324, whole genome shotgun sequence (11110 bp)
Overview 1 RT 1: 8767-10752 bp Neighborhood of RT #1 [8767, 10997] PHA02517 RVT-GII GIIM Feature: gene Location: 8767-9030 bp Feature: gene Location: 9088-9534 bp Feature: domain Description: PHA02517 Location: 9091-9532 bp Feature: domain Description: PHA025 17 Location: 9091-95 32 bp Feature: gene Location: 9651-10997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9747-10479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9747-10479 bp Feature: domain Description: GIIM Note: maturase Location: 10554-10752 bp Feature: domain Description: GIIM Note: maturase Location: 105 5 4-1075 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)