myRT

myRT report for GCA_002466755.1_ASM246675v1

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Seq: NJNK01000013.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_13_length_118104_cov_44.3023, whole genome shotgun sequence (118104 bp)
Overview 1 RT 1: 104455-108337 bp Neighborhood of RT #1 [104455, 108342] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 104455-105171 bp Feature: domain Description: rph Location: 104458-105166 bp Feature: domain Description: rph Location: 1 04458-1 051 66 bp Feature: gene Location: 105222-105878 bp Feature: domain Description: pyrE Location: 105240-105873 bp Feature: domain Description: pyrE Location: 1 05240-1 05873 bp Feature: gene Location: 106176-107135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106311-106860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0631 1 -1 06860 bp Feature: gene Location: 107181-107777 bp Feature: domain Description: slmA Location: 107187-107763 bp Feature: domain Description: slmA Location: 1 071 87-1 07763 bp Feature: gene Location: 107884-108342 bp Feature: domain Description: dut Location: 107890-108337 bp Feature: domain Description: dut Location: 1 07890-1 08337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NJNK01000026.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_26_length_56652_cov_42.8084, whole genome shotgun sequence (56652 bp)
Overview 1 RT 1: 29523-33883 bp Neighborhood of RT #1 [29523, 33885] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 29523-30623 bp Feature: domain Description: D Location: 29529-30612 bp Feature: domain Description: D Location: 2 952 9-30612 bp Feature: gene Location: 30714-30932 bp Feature: domain Description: PRK09678 Location: 30717-30915 bp Feature: domain Description: PRK09678 Location: 30717-30915 bp Feature: gene Location: 31336-32109 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31471-31924 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31471-3192 4 bp Feature: gene Location: 32795-33277 bp Feature: domain Description: SmpB Location: 32825-33272 bp Feature: domain Description: SmpB Location: 32 82 5-332 72 bp Feature: gene Location: 33409-33885 bp Feature: domain Description: PRK10724 Location: 33415-33883 bp Feature: domain Description: PRK1072 4 Location: 33415-33883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NJNK01000051.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_51_length_23438_cov_11.438, whole genome shotgun sequence (23438 bp)
Overview 1 RT 1: 120-3303 bp Neighborhood of RT #1 [120, 3303] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 120-311 bp Feature: gene Location: 382-516 bp Feature: gene Location: 589-2256 bp Feature: domain Description: RVT_N Location: 637-874 bp Feature: domain Description: RVT_N Location: 63 7-874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925-1567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925-1567 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1852 bp Feature: domain Description: GIIM Note: maturase Location: 1618-1852 bp Feature: domain Description: HNHc Note: nucleases Location: 2062-2221 bp Feature: domain Description: HNHc Note: nucleases Location: 2062-2221 bp Feature: gene Location: 2536-2718 bp Feature: gene Location: 2830-3303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NJNK01000064.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_64_length_12406_cov_7.8334, whole genome shotgun sequence (12406 bp)
Overview 1 RT 1: 8080-11217 bp Neighborhood of RT #1 [8080, 11217] DUF1281 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 8080-8439 bp Feature: domain Description: DUF1281 Location: 8089-8404 bp Feature: domain Description: DUF1281 Location: 8089-84 04 bp Feature: gene Location: 8503-8814 bp Feature: gene Location: 9044-10744 bp Feature: domain Description: RVT_N Location: 9098-9341 bp Feature: domain Description: RVT_N Location: 9098-934 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-10022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-10022 bp Feature: domain Description: GIIM Note: maturase Location: 10073-10307 bp Feature: domain Description: GIIM Note: maturase Location: 10073-10307 bp Feature: domain Description: HNHc Note: nucleases Location: 10538-10688 bp Feature: domain Description: HNHc Note: nucleases Location: 10538-10688 bp Feature: gene Location: 10781-10909 bp Feature: gene Location: 10960-11217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NJNK01000066.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_66_length_10420_cov_9.11708, whole genome shotgun sequence (10420 bp)
Overview 1 RT 1: 8538-10353 bp Neighborhood of RT #1 [8538, 10370] TnpB_IS66 RVT_N RVT-GII Feature: gene Location: 8538-8849 bp Feature: domain Description: TnpB_IS66 Location: 8565-8844 bp Feature: domain Description: TnpB_IS66 Location: 85 65 -8844 bp Feature: gene Location: 9056-9196 bp Feature: gene Location: 9447-10370 bp Feature: domain Description: RVT_N Location: 9495-9738 bp Feature: domain Description: RVT_N Location: 9495 -9738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9783-10353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9783-1035 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII

Seq: NJNK01000068.1 Escherichia coli strain MOD1-EC101 MOD1-EC101_68_length_9826_cov_9.81619, whole genome shotgun sequence (9826 bp)
Overview 1 RT 1: 7483-9468 bp Neighborhood of RT #1 [7483, 9713] PHA02517 RVT-GII GIIM Feature: gene Location: 7483-7746 bp Feature: gene Location: 7804-8250 bp Feature: domain Description: PHA02517 Location: 7807-8248 bp Feature: domain Description: PHA02517 Location: 7807-8248 bp Feature: gene Location: 8367-9713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8463-9195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846 3-9195 bp Feature: domain Description: GIIM Note: maturase Location: 9270-9468 bp Feature: domain Description: GIIM Note: maturase Location: 9270-946 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)