myRT

myRT report for GCA_002466925.1_ASM246692v1

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Seq: NJLF01000025.1 Escherichia coli strain MOD1-EC667 MOD1-EC667_25_length_57884_cov_38.4875, whole genome shotgun sequence (57884 bp)
Overview 1 RT 1: 30009-33561 bp Neighborhood of RT #1 [30009, 33566] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 30009-30173 bp Feature: gene Location: 30184-30381 bp Feature: domain Description: PRK09413 Location: 30187-30349 bp Feature: domain Description: PRK0941 3 Location: 301 87-30349 bp Feature: gene Location: 30857-32209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31178-31796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 78-31 796 bp Feature: domain Description: GIIM Note: maturase Location: 31844-32075 bp Feature: domain Description: GIIM Note: maturase Location: 31 844-32075 bp Feature: gene Location: 32418-32819 bp Feature: gene Location: 32919-33566 bp Feature: domain Description: PinE Location: 33012-33561 bp Feature: domain Description: PinE Location: 3301 2-33561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: NJLF01000068.1 Escherichia coli strain MOD1-EC667 MOD1-EC667_68_length_8797_cov_52.6914, whole genome shotgun sequence (8797 bp)
Overview 1 RT 1: 5188-8587 bp Neighborhood of RT #1 [5188, 8652] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5188-5367 bp Feature: gene Location: 5544-5948 bp Feature: domain Description: PHA02517 Location: 5547-5937 bp Feature: domain Description: PHA02 517 Location: 5547-5937 bp Feature: gene Location: 6113-7645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6395-7127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6395-712 7 bp Feature: domain Description: GIIM Note: maturase Location: 7202-7400 bp Feature: domain Description: GIIM Note: maturase Location: 72 02 -7400 bp Feature: gene Location: 7610-8014 bp Feature: gene Location: 8227-8652 bp Feature: domain Description: PHA02517 Location: 8251-8587 bp Feature: domain Description: PHA02 517 Location: 82 51-8587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)