myRT

myRT report for GCA_002466955.1_ASM246695v1

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Seq: NJLP01000152.1 Escherichia coli strain MOD1-EC568 MOD1-EC568_152_length_8720_cov_144.672, whole genome shotgun sequence (8720 bp)
Overview 1 RT 1: 1-7324 bp Neighborhood of RT #1 [1, 7326] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-243 bp Feature: domain Description: PHA02517 Location: 4-97 bp Feature: domain Description: PHA0251 7 Location: 4-97 bp Feature: gene Location: 292-663 bp Feature: gene Location: 957-2480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 230-1 962 bp Feature: domain Description: GIIM Note: maturase Location: 2037-2235 bp Feature: domain Description: GIIM Note: maturase Location: 2037-2235 bp Feature: gene Location: 2657-3043 bp Feature: domain Description: PHA02517 Location: 2660-3041 bp Feature: domain Description: PHA0251 7 Location: 2660-3041 bp Feature: gene Location: 3208-7326 bp Feature: domain Description: ESPR Location: 3211-3280 bp Feature: domain Description: ESPR Location: 321 1 -3280 bp Feature: domain Description: Peptidase_S6 Location: 3361-5533 bp Feature: domain Description: Peptidase_S6 Location: 3361 -5533 bp Feature: domain Description: autotrans_barl Location: 6097-7324 bp Feature: domain Description: autotrans_barl Location: 6097-7324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: NJLP01000178.1 Escherichia coli strain MOD1-EC568 MOD1-EC568_178_length_5901_cov_64.9033, whole genome shotgun sequence (5901 bp)
Overview 1 RT 1: 129-2715 bp Neighborhood of RT #1 [129, 2729] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 129-260 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-2 34 bp Feature: gene Location: 738-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 4-1578 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: gene Location: 2071-2217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 083-2 194 bp Feature: gene Location: 2244-2729 bp Feature: domain Description: COG3547 Location: 2262-2715 bp Feature: domain Description: COG3547 Location: 2 2 62 -2 715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJLP01000196.1 Escherichia coli strain MOD1-EC568 MOD1-EC568_196_length_4510_cov_67.5556, whole genome shotgun sequence (4510 bp)
Overview 1 RT 1: 328-4363 bp Neighborhood of RT #1 [328, 4365] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 328-549 bp Feature: domain Description: Tra5 Location: 340-532 bp Feature: domain Description: Tra5 Location: 3 40-53 2 bp Feature: gene Location: 562-1689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1519 bp Feature: gene Location: 1988-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994-2138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1994-213 8 bp Feature: domain Description: GIIM Note: maturase Location: 2222-2438 bp Feature: domain Description: GIIM Note: maturase Location: 2222-243 8 bp Feature: gene Location: 2868-3110 bp Feature: gene Location: 3022-4365 bp Feature: domain Description: ushA Location: 3025-4363 bp Feature: domain Description: ushA Location: 3 025-43 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJLP01000213.1 Escherichia coli strain MOD1-EC568 MOD1-EC568_213_length_3685_cov_61.8661, whole genome shotgun sequence (3685 bp)
Overview 1 RT 1: 2185-3682 bp Neighborhood of RT #1 [2185, 3682] RVT-GII GIIM HNHc Feature: gene Location: 2185-2379 bp Feature: gene Location: 2437-2658 bp Feature: gene Location: 2691-3452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700-2760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2700-2760 bp Feature: domain Description: GIIM Note: maturase Location: 2814-3045 bp Feature: domain Description: GIIM Note: maturase Location: 2814 -304 5 bp Feature: domain Description: HNHc Note: nucleases Location: 3246-3405 bp Feature: domain Description: HNHc Note: nucleases Location: 324 6-34 05 bp Feature: gene Location: 3548-3682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NJLP01000261.1 Escherichia coli strain MOD1-EC568 MOD1-EC568_261_length_1659_cov_74.3338, whole genome shotgun sequence (1659 bp)
Overview 1 RT 1: 145-1522 bp Neighborhood of RT #1 [145, 1527] HTH_23 InsE RVT-GII RVT-GII Feature: gene Location: 145-726 bp Feature: domain Description: HTH_23 Location: 253-340 bp Feature: domain Description: HTH_23 Location: 25 3-340 bp Feature: domain Description: InsE Location: 469-664 bp Feature: domain Description: InsE Location: 469-664 bp Feature: gene Location: 907-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1237 bp Feature: gene Location: 1324-1527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-15 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII