myRT

myRT report for GCA_002467105.1_ASM246710v1

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Seq: NJMZ01000191.1 Escherichia coli strain MOD1-EC269 MOD1-EC269_191_length_5714_cov_47.6816, whole genome shotgun sequence (5714 bp)
Overview 1 RT 1: 2-2528 bp Neighborhood of RT #1 [2, 2542] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-241 bp Feature: gene Location: 551-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1 391 bp Feature: domain Description: GIIM Note: maturase Location: 1469-1691 bp Feature: domain Description: GIIM Note: maturase Location: 1 469-1 691 bp Feature: gene Location: 1884-2030 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1896-2007 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 896-2007 bp Feature: gene Location: 2057-2542 bp Feature: domain Description: COG3547 Location: 2075-2528 bp Feature: domain Description: COG3547 Location: 2075-2528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJMZ01000199.1 Escherichia coli strain MOD1-EC269 MOD1-EC269_199_length_5143_cov_103.588, whole genome shotgun sequence (5143 bp)
Overview 1 RT 1: 1-4387 bp Neighborhood of RT #1 [1, 4389] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-297 bp Feature: domain Description: Tra5 Location: 4-280 bp Feature: domain Description: Tra5 Location: 4-2 80 bp Feature: gene Location: 310-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-12 67 bp Feature: gene Location: 1736-2263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742-1886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742 -1886 bp Feature: domain Description: GIIM Note: maturase Location: 1970-2186 bp Feature: domain Description: GIIM Note: maturase Location: 1970-2 186 bp Feature: gene Location: 2616-2858 bp Feature: gene Location: 2770-4389 bp Feature: domain Description: ushA Location: 2785-4387 bp Feature: domain Description: ushA Location: 2 785-4387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJMZ01000286.1 Escherichia coli strain MOD1-EC269 MOD1-EC269_286_length_1659_cov_55.9937, whole genome shotgun sequence (1659 bp)
Overview 1 RT 1: 145-1522 bp Neighborhood of RT #1 [145, 1527] HTH_23 InsE RVT-GII RVT-GII Feature: gene Location: 145-813 bp Feature: domain Description: HTH_23 Location: 253-340 bp Feature: domain Description: HTH_23 Location: 253 -3 40 bp Feature: domain Description: InsE Location: 469-664 bp Feature: domain Description: InsE Location: 469-664 bp Feature: gene Location: 907-1263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-123 7 bp Feature: gene Location: 1324-1527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1432-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 2-1522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII