myRT

myRT report for GCA_002467115.1_ASM246711v1

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Seq: NJNA01000115.1 Escherichia coli strain MOD1-EC268 MOD1-EC268_115_length_7145_cov_75.7881, whole genome shotgun sequence (7145 bp)
Overview 1 RT 1: 129-2715 bp Neighborhood of RT #1 [129, 2729] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 129-260 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 41 -234 bp Feature: gene Location: 822-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1 578 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1 656-1 878 bp Feature: gene Location: 2071-2217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-21 94 bp Feature: gene Location: 2244-2729 bp Feature: domain Description: COG3547 Location: 2262-2715 bp Feature: domain Description: COG3547 Location: 2262-271 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJNA01000134.1 Escherichia coli strain MOD1-EC268 MOD1-EC268_134_length_5189_cov_57.8302, whole genome shotgun sequence (5189 bp)
Overview 1 RT 1: 329-4640 bp Neighborhood of RT #1 [329, 4642] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 329-550 bp Feature: domain Description: Tra5 Location: 341-533 bp Feature: domain Description: Tra5 Location: 341-533 bp Feature: gene Location: 563-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-152 0 bp Feature: gene Location: 1989-2516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2 139 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2439 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 3-2 439 bp Feature: gene Location: 2869-3111 bp Feature: gene Location: 3023-4642 bp Feature: domain Description: ushA Location: 3038-4640 bp Feature: domain Description: ushA Location: 3038-4640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJNA01000171.1 Escherichia coli strain MOD1-EC268 MOD1-EC268_171_length_2613_cov_8.59385, whole genome shotgun sequence (2613 bp)
Overview 1 RT 1: 74-2610 bp Neighborhood of RT #1 [74, 2610] RVT-UG5 Feature: gene Location: 74-2125 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 89-386 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 89-3 86 bp Feature: gene Location: 2266-2610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: NJNA01000034.1 Escherichia coli strain MOD1-EC268 MOD1-EC268_34_length_48890_cov_51.7183, whole genome shotgun sequence (48890 bp)
Overview 1 RT 1: 35927-39807 bp Neighborhood of RT #1 [35927, 39812] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35927-36643 bp Feature: domain Description: rph Location: 35930-36638 bp Feature: domain Description: rph Location: 35930-36638 bp Feature: gene Location: 36694-37350 bp Feature: domain Description: pyrE Location: 36712-37345 bp Feature: domain Description: pyrE Location: 36712-3734 5 bp Feature: gene Location: 37646-38605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37781-38330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37781-38330 bp Feature: gene Location: 38651-39247 bp Feature: domain Description: slmA Location: 38657-39233 bp Feature: domain Description: slmA Location: 38657-39233 bp Feature: gene Location: 39354-39812 bp Feature: domain Description: dut Location: 39360-39807 bp Feature: domain Description: dut Location: 39360-39807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NJNA01000097.1 Escherichia coli strain MOD1-EC268 MOD1-EC268_97_length_11268_cov_47.8479, whole genome shotgun sequence (11268 bp)
Overview 1 RT 1: 5159-11003 bp Neighborhood of RT #1 [5159, 11152] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 5159-5425 bp Feature: gene Location: 5661-5795 bp Feature: gene Location: 5952-7625 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: domain Description: GIIM Note: maturase Location: 6987-7218 bp Feature: domain Description: GIIM Note: maturase Location: 6987-7218 bp Feature: domain Description: HNHc Note: nucleases Location: 7419-7578 bp Feature: domain Description: HNHc Note: nucleases Location: 7419-75 78 bp Feature: gene Location: 7658-7879 bp Feature: gene Location: 7937-8131 bp Feature: gene Location: 8647-9072 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: gene Location: 9091-9744 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-9712 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-9712 bp Feature: gene Location: 9770-9973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: gene Location: 10034-10390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10043-10364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10043-10364 bp Feature: gene Location: 10484-11152 bp Feature: domain Description: HTH_23 Location: 10592-10679 bp Feature: domain Description: HTH_23 Location: 105 92-10679 bp Feature: domain Description: InsE Location: 10808-11003 bp Feature: domain Description: InsE Location: 10808-11003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963)