myRT

myRT report for GCA_002467125.1_ASM246712v1

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Seq: NJNC01000020.1 Escherichia coli strain MOD1-EC164 MOD1-EC164_20_length_65033_cov_39.4819, whole genome shotgun sequence (65033 bp)
Overview 1 RT 1: 45952-50905 bp Neighborhood of RT #1 [45952, 50955] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc COG3547 Feature: gene Location: 45952-46185 bp Feature: domain Description: DUF905 Location: 45982-46180 bp Feature: domain Description: DUF905 Location: 45982-461 80 bp Feature: gene Location: 46243-46683 bp Feature: domain Description: PRK13732 Location: 46249-46681 bp Feature: domain Description: PRK1 3732 Location: 46249-46681 bp Feature: gene Location: 46878-48779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47145-47976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 45-47976 bp Feature: domain Description: Intron_maturas2 Location: 48090-48348 bp Feature: domain Description: Intron_maturas2 Location: 48090-48348 bp Feature: domain Description: HNHc Note: nucleases Location: 48522-48684 bp Feature: domain Description: HNHc Note: nucleases Location: 48522-48684 bp Feature: gene Location: 49576-50130 bp Feature: gene Location: 49984-50955 bp Feature: domain Description: COG3547 Location: 50011-50905 bp Feature: domain Description: COG3547 Location: 5001 1 -50905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG3547 (Transposase )

Seq: NJNC01000022.1 Escherichia coli strain MOD1-EC164 MOD1-EC164_22_length_55618_cov_52.6094, whole genome shotgun sequence (55618 bp)
Overview 1 RT 1: 39388-43140 bp Neighborhood of RT #1 [39388, 43349] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 39388-39621 bp Feature: domain Description: DinI Location: 39430-39616 bp Feature: domain Description: DinI Location: 39430-39616 bp Feature: gene Location: 39790-39924 bp Feature: gene Location: 40100-41035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40202-40796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 402 02 -40796 bp Feature: gene Location: 41035-42669 bp Feature: domain Description: COG3950 Location: 41173-42631 bp Feature: domain Description: COG3950 Location: 41173-42 631 bp Feature: gene Location: 42789-43349 bp Feature: domain Description: TIGR02646 Location: 42792-43140 bp Feature: domain Description: TIGR02 646 Location: 42 792 -43140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)