myRT

myRT report for GCA_002467135.1_ASM246713v1

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Seq: NJND01000115.1 Escherichia coli strain MOD1-EC163 MOD1-EC163_115_length_6800_cov_101.269, whole genome shotgun sequence (6800 bp)
Overview 1 RT 1: 129-2715 bp Neighborhood of RT #1 [129, 2729] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 129-260 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 41 -234 bp Feature: gene Location: 822-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1 578 bp Feature: domain Description: GIIM Note: maturase Location: 1656-1878 bp Feature: domain Description: GIIM Note: maturase Location: 1 656-1 878 bp Feature: gene Location: 2071-2217 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2083-21 94 bp Feature: gene Location: 2244-2729 bp Feature: domain Description: COG3547 Location: 2262-2715 bp Feature: domain Description: COG3547 Location: 2262-271 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: NJND01000130.1 Escherichia coli strain MOD1-EC163 MOD1-EC163_130_length_5189_cov_96.2297, whole genome shotgun sequence (5189 bp)
Overview 1 RT 1: 329-4640 bp Neighborhood of RT #1 [329, 4642] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 329-550 bp Feature: domain Description: Tra5 Location: 341-533 bp Feature: domain Description: Tra5 Location: 341-533 bp Feature: gene Location: 563-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-152 0 bp Feature: gene Location: 1989-2516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1995-2 139 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2439 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 3-2 439 bp Feature: gene Location: 2869-3111 bp Feature: gene Location: 3023-4642 bp Feature: domain Description: ushA Location: 3038-4640 bp Feature: domain Description: ushA Location: 3038-4640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: NJND01000021.1 Escherichia coli strain MOD1-EC163 MOD1-EC163_21_length_80128_cov_48.4741, whole genome shotgun sequence (80128 bp)
Overview 1 RT 1: 35925-39805 bp Neighborhood of RT #1 [35925, 39810] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35925-36641 bp Feature: domain Description: rph Location: 35928-36636 bp Feature: domain Description: rph Location: 3 5928-3 663 6 bp Feature: gene Location: 36692-37348 bp Feature: domain Description: pyrE Location: 36710-37343 bp Feature: domain Description: pyrE Location: 3 6710-3 73 43 bp Feature: gene Location: 37644-38603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37779-38328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7779-3 83 28 bp Feature: gene Location: 38649-39245 bp Feature: domain Description: slmA Location: 38655-39231 bp Feature: domain Description: slmA Location: 3 8655-3 923 1 bp Feature: gene Location: 39352-39810 bp Feature: domain Description: dut Location: 39358-39805 bp Feature: domain Description: dut Location: 3 93 58-3 9805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NJND01000069.1 Escherichia coli strain MOD1-EC163 MOD1-EC163_69_length_19926_cov_43.8074, whole genome shotgun sequence (19926 bp)
Overview 1 RT 1: 74-4118 bp Neighborhood of RT #1 [74, 4162] RVT-UG5 PRK09692 Feature: gene Location: 74-1978 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 80-239 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 80-239 bp Feature: gene Location: 2266-2814 bp Feature: gene Location: 2906-4162 bp Feature: domain Description: PRK09692 Location: 2915-4118 bp Feature: domain Description: PRK09692 Location: 2915-4 118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)

Seq: NJND01000095.1 Escherichia coli strain MOD1-EC163 MOD1-EC163_95_length_11268_cov_80.2391, whole genome shotgun sequence (11268 bp)
Overview 1 RT 1: 5159-11003 bp Neighborhood of RT #1 [5159, 11152] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 5159-5425 bp Feature: gene Location: 5661-5795 bp Feature: gene Location: 5952-7625 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: domain Description: RVT_N Location: 6000-6243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6288-6933 bp Feature: domain Description: GIIM Note: maturase Location: 6987-7218 bp Feature: domain Description: GIIM Note: maturase Location: 6987-7218 bp Feature: domain Description: HNHc Note: nucleases Location: 7419-7578 bp Feature: domain Description: HNHc Note: nucleases Location: 7419-75 78 bp Feature: gene Location: 7658-7879 bp Feature: gene Location: 7937-8131 bp Feature: gene Location: 8647-9072 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: domain Description: Antirestrict Location: 8782-9070 bp Feature: gene Location: 9091-9744 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-9712 bp Feature: domain Description: DDE_Tnp_1 Location: 9097-9712 bp Feature: gene Location: 9770-9973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9878-9968 bp Feature: gene Location: 10034-10390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10043-10364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10043-10364 bp Feature: gene Location: 10484-11152 bp Feature: domain Description: HTH_23 Location: 10592-10679 bp Feature: domain Description: HTH_23 Location: 105 92-10679 bp Feature: domain Description: InsE Location: 10808-11003 bp Feature: domain Description: InsE Location: 10808-11003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963)