myRT

myRT report for GCA_002467275.1_ASM246727v1

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Seq: NMNO01000011.1 Escherichia coli strain MOD1-EC6916 MOD1-EC6916_11_length_146198_cov_45.0711, whole genome shotgun sequence (146198 bp)
Overview 1 RT 1: 142445-145991 bp Neighborhood of RT #1 [142445, 146197] DUF5405 Phage_GPA RVT-Retrons Feature: gene Location: 142445-142720 bp Feature: domain Description: DUF5405 Location: 142463-142703 bp Feature: domain Description: DUF5405 Location: 1 42463-1 42703 bp Feature: gene Location: 142629-144986 bp Feature: domain Description: Phage_GPA Location: 143115-144102 bp Feature: domain Description: Phage_GPA Location: 1 431 1 5-1 441 02 bp Feature: gene Location: 145313-146197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145430-145991 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 45430-1 45991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons

Seq: NMNO01000025.1 Escherichia coli strain MOD1-EC6916 MOD1-EC6916_25_length_64668_cov_43.2294, whole genome shotgun sequence (64668 bp)
Overview 1 RT 1: 35998-39851 bp Neighborhood of RT #1 [35998, 39851] PRK15452 GIIM RVT-GII Feature: gene Location: 35998-37359 bp Feature: domain Description: PRK15452 Location: 36001-37324 bp Feature: domain Description: PRK15452 Location: 36001-3732 4 bp Feature: gene Location: 37669-38181 bp Feature: domain Description: GIIM Note: maturase Location: 37789-38020 bp Feature: domain Description: GIIM Note: maturase Location: 37789-3802 0 bp Feature: gene Location: 38284-39054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38614-39046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38614-39046 bp Feature: gene Location: 39282-39578 bp Feature: gene Location: 39642-39851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15452 (putative protease; Provisional), GIIM (pfam08388), RVT-GII

Seq: NMNO01000030.1 Escherichia coli strain MOD1-EC6916 MOD1-EC6916_30_length_56012_cov_44.5769, whole genome shotgun sequence (56012 bp)
Overview 1 RT 1: 40350-46390 bp Neighborhood of RT #1 [40350, 46395] RVT-Retrons Q P Feature: gene Location: 40350-40565 bp Feature: gene Location: 40565-41407 bp Feature: gene Location: 41791-43548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41935-42556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4193 5-42556 bp Feature: gene Location: 43598-44629 bp Feature: domain Description: Q Location: 43607-44624 bp Feature: domain Description: Q Location: 43 607-44624 bp Feature: gene Location: 44629-46395 bp Feature: domain Description: P Location: 44656-46390 bp Feature: domain Description: P Location: 44656-463 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: NMNO01000004.1 Escherichia coli strain MOD1-EC6916 MOD1-EC6916_4_length_245321_cov_50.5346, whole genome shotgun sequence (245321 bp)
Overview 1 RT 1: 219683-225473 bp Neighborhood of RT #1 [219683, 225481] DEDD_Tnp_IS110 Transposase_20 PHA02517 RVT-GII GIIM PHA02517 deoxyribose_mutarotase Feature: gene Location: 219683-221041 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 219746-220178 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 21974 6-220178 bp Feature: domain Description: Transposase_20 Location: 220574-220823 bp Feature: domain Description: Transposase_20 Location: 220574 -220823 bp Feature: gene Location: 220920-221558 bp Feature: domain Description: PHA02517 Location: 221157-221493 bp Feature: domain Description: PHA02517 Location: 221157-2214 93 bp Feature: gene Location: 222150-223673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222423-223155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2224 23-223155 bp Feature: domain Description: GIIM Note: maturase Location: 223230-223428 bp Feature: domain Description: GIIM Note: maturase Location: 223230-2234 28 bp Feature: gene Location: 223838-224242 bp Feature: domain Description: PHA02517 Location: 223841-224231 bp Feature: domain Description: PHA02517 Location: 22384 1-224 231 bp Feature: gene Location: 224468-225481 bp Feature: domain Description: deoxyribose_mutarotase Location: 224609-225473 bp Feature: domain Description: deoxyribose_mutarotase Location: 224 609-2254 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), deoxyribose_mutarotase (cd09269)