myRT

myRT report for GCA_002467325.1_ASM246732v1

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Seq: NMNX01000024.1 Escherichia coli strain MOD1-EC6903 MOD1-EC6903_24_length_65556_cov_37.6518, whole genome shotgun sequence (65556 bp)
Overview 1 RT 1: 38195-42555 bp Neighborhood of RT #1 [38195, 42557] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 38195-39295 bp Feature: domain Description: D Location: 38201-39284 bp Feature: domain Description: D Location: 38201 -39284 bp Feature: gene Location: 39386-39604 bp Feature: domain Description: PRK09678 Location: 39389-39587 bp Feature: domain Description: PRK09678 Location: 39389-39587 bp Feature: gene Location: 40008-40781 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 40143-40596 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 401 43-40596 bp Feature: gene Location: 41467-41949 bp Feature: domain Description: SmpB Location: 41497-41944 bp Feature: domain Description: SmpB Location: 41 497-41 944 bp Feature: gene Location: 42081-42557 bp Feature: domain Description: PRK10724 Location: 42087-42555 bp Feature: domain Description: PRK1 0724 Location: 42087-42555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NMNX01000028.1 Escherichia coli strain MOD1-EC6903 MOD1-EC6903_28_length_47465_cov_39.1292, whole genome shotgun sequence (47465 bp)
Overview 1 RT 1: 37574-41475 bp Neighborhood of RT #1 [37574, 41475] PRK01271 YhhI YhhI RVT-GII GIIM Feature: gene Location: 37574-37801 bp Feature: domain Description: PRK01271 Location: 37577-37799 bp Feature: domain Description: PRK012 71 Location: 37577-37799 bp Feature: gene Location: 37834-38625 bp Feature: domain Description: YhhI Location: 37837-38200 bp Feature: domain Description: YhhI Location: 37837-382 00 bp Feature: domain Description: YhhI Location: 38257-38608 bp Feature: domain Description: YhhI Location: 382 57-38608 bp Feature: gene Location: 38832-40331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39285-39942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 85-39942 bp Feature: domain Description: GIIM Note: maturase Location: 40026-40236 bp Feature: domain Description: GIIM Note: maturase Location: 4002 6-402 36 bp Feature: gene Location: 40680-41054 bp Feature: gene Location: 41275-41475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: NMNX01000041.1 Escherichia coli strain MOD1-EC6903 MOD1-EC6903_41_length_25968_cov_64.1214, whole genome shotgun sequence (25968 bp)
Overview 1 RT 1: 18700-22346 bp Neighborhood of RT #1 [18700, 22348] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 18700-19971 bp Feature: domain Description: umuC Location: 18703-19963 bp Feature: domain Description: umuC Location: 18703 -19963 bp Feature: gene Location: 19971-20654 bp Feature: domain Description: PRK10276 Location: 20274-20637 bp Feature: domain Description: PRK10276 Location: 20274-2063 7 bp Feature: gene Location: 20747-21499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20750-21107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20750-21107 bp Feature: gene Location: 21651-21926 bp Feature: domain Description: InsA Location: 21654-21918 bp Feature: domain Description: InsA Location: 21654-21918 bp Feature: gene Location: 21845-22348 bp Feature: domain Description: DDE_Tnp_IS1 Location: 21956-22346 bp Feature: domain Description: DDE_Tnp_IS1 Location: 21956-223 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)