myRT

myRT report for GCA_002467665.1_ASM246766v1

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Seq: NMME01000100.1 Escherichia coli strain MOD1-EC6591 MOD1-EC6591_100_length_5035_cov_44.6043, whole genome shotgun sequence (5035 bp)
Overview 1 RT 1: 3-4685 bp Neighborhood of RT #1 [3, 4702] RhsA RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 3-2507 bp Feature: domain Description: RhsA Location: 6-2073 bp Feature: domain Description: RhsA Location: 6-2073 bp Feature: gene Location: 2872-3099 bp Feature: gene Location: 3350-4093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821-4091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3821 -4091 bp Feature: gene Location: 4148-4429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4154-4415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 54-441 5 bp Feature: gene Location: 4451-4702 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4457-4685 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4457-4685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: NMME01000057.1 Escherichia coli strain MOD1-EC6591 MOD1-EC6591_57_length_23209_cov_38.5584, whole genome shotgun sequence (23209 bp)
Overview 1 RT 1: 16830-20812 bp Neighborhood of RT #1 [16830, 20838] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 16830-17861 bp Feature: domain Description: Asparaginase_2 Location: 16920-17853 bp Feature: domain Description: Asparaginase_2 Location: 1692 0-17853 bp Feature: gene Location: 18188-18337 bp Feature: gene Location: 18385-18831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18691-18793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18691-18793 bp Feature: gene Location: 19053-19424 bp Feature: gene Location: 19477-20838 bp Feature: domain Description: DcuC Location: 19480-20812 bp Feature: domain Description: DcuC Location: 19480-2 0812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: NMME01000066.1 Escherichia coli strain MOD1-EC6591 MOD1-EC6591_66_length_19076_cov_47.7176, whole genome shotgun sequence (19076 bp)
Overview 1 RT 1: 15368-18846 bp Neighborhood of RT #1 [15368, 18857] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 15368-15694 bp Feature: domain Description: InsE Location: 15371-15692 bp Feature: domain Description: InsE Location: 153 71-15692 bp Feature: gene Location: 15694-16173 bp Feature: domain Description: PHA02517 Location: 15754-16108 bp Feature: domain Description: PHA02517 Location: 15754-16108 bp Feature: gene Location: 16765-18288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17038-17770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703 8-17770 bp Feature: domain Description: GIIM Note: maturase Location: 17845-18043 bp Feature: domain Description: GIIM Note: maturase Location: 17845-18043 bp Feature: gene Location: 18453-18857 bp Feature: domain Description: PHA02517 Location: 18456-18846 bp Feature: domain Description: PHA02517 Location: 18456-18846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NMME01000071.1 Escherichia coli strain MOD1-EC6591 MOD1-EC6591_71_length_15874_cov_35.2392, whole genome shotgun sequence (15874 bp)
Overview 1 RT 1: 6795-10908 bp Neighborhood of RT #1 [6795, 10908] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 6795-7028 bp Feature: domain Description: DUF905 Location: 6825-7023 bp Feature: domain Description: DUF905 Location: 6825-7023 bp Feature: gene Location: 7084-7524 bp Feature: domain Description: PRK13732 Location: 7090-7522 bp Feature: domain Description: PRK13732 Location: 7090-7522 bp Feature: gene Location: 7719-9620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7986-8817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7986-8817 bp Feature: domain Description: Intron_maturas2 Location: 8931-9189 bp Feature: domain Description: Intron_maturas2 Location: 8931-9189 bp Feature: domain Description: HNHc Note: nucleases Location: 9363-9525 bp Feature: domain Description: HNHc Note: nucleases Location: 9363-9525 bp Feature: gene Location: 10337-10573 bp Feature: gene Location: 10642-10908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)