myRT

myRT report for GCA_002467895.1_ASM246789v1

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Seq: NMNC01000016.1 Escherichia coli strain MOD1-EC7008 MOD1-EC7008_16_length_102850_cov_29.9758, whole genome shotgun sequence (102850 bp)
Overview 1 RT 1: 100677-102417 bp Neighborhood of RT #1 [100677, 102848] RVT-Retrons Feature: gene Location: 100677-101012 bp Feature: gene Location: 101275-101436 bp Feature: gene Location: 101469-102848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101793-102417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 793-1 0241 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NMNC01000026.1 Escherichia coli strain MOD1-EC7008 MOD1-EC7008_26_length_61654_cov_99.0691, whole genome shotgun sequence (61654 bp)
Overview 1 RT 1: 3667-7319 bp Neighborhood of RT #1 [3667, 7324] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3667-3807 bp Feature: gene Location: 4141-4350 bp Feature: gene Location: 4485-6386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4752-5583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4752 -5583 bp Feature: domain Description: Intron_maturas2 Location: 5697-5955 bp Feature: domain Description: Intron_maturas2 Location: 5697-5955 bp Feature: domain Description: HNHc Note: nucleases Location: 6129-6291 bp Feature: domain Description: HNHc Note: nucleases Location: 612 9-62 91 bp Feature: gene Location: 6581-7033 bp Feature: domain Description: PRK13732 Location: 6587-7031 bp Feature: domain Description: PRK13732 Location: 6587-7031 bp Feature: gene Location: 7091-7324 bp Feature: domain Description: DUF905 Location: 7121-7319 bp Feature: domain Description: DUF905 Location: 712 1-7319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: NMNC01000029.1 Escherichia coli strain MOD1-EC7008 MOD1-EC7008_29_length_52467_cov_36.695, whole genome shotgun sequence (52467 bp)
Overview 1 RT 1: 44772-49111 bp Neighborhood of RT #1 [44772, 49302] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C rve Feature: gene Location: 44772-45119 bp Feature: domain Description: TnpB_IS66 Location: 44799-45090 bp Feature: domain Description: TnpB_IS66 Location: 44799-45090 bp Feature: gene Location: 45139-46578 bp Feature: domain Description: LZ_Tnp_IS66 Location: 45277-45502 bp Feature: domain Description: LZ_Tnp_IS66 Location: 45277-45502 bp Feature: domain Description: zf-IS66 Location: 45523-45655 bp Feature: domain Description: zf-IS66 Location: 45523 -45655 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45700-46537 bp Feature: domain Description: DDE_Tnp_IS66 Location: 45700-4653 7 bp Feature: gene Location: 47040-48272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47241-47895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47241-47895 bp Feature: domain Description: GIIM Note: maturase Location: 47973-48195 bp Feature: domain Description: GIIM Note: maturase Location: 47973 -48195 bp Feature: gene Location: 48388-48534 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48400-48511 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 48400-48511 bp Feature: gene Location: 48610-49302 bp Feature: domain Description: rve Location: 48745-49111 bp Feature: domain Description: rve Location: 48745-49111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), rve (pfam00665)