myRT

myRT report for GCA_002467955.1_ASM246795v1

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Seq: NMNH01000001.1 Escherichia coli strain MOD1-EC6980 MOD1-EC6980_1_length_629734_cov_61.0984, whole genome shotgun sequence (629734 bp)
Overview 1 RT 1: 596309-600628 bp Neighborhood of RT #1 [596309, 600645] galF DDE_Tnp_1_assoc RVT-GII RVT-GII YhhI YhhI YhhI Feature: gene Location: 596309-597202 bp Feature: domain Description: galF Location: 596312-597200 bp Feature: domain Description: galF Location: 59631 2-597200 bp Feature: gene Location: 597725-597952 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 597740-597905 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 597740-597905 bp Feature: gene Location: 598683-598904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598848-598893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598848-598893 bp Feature: gene Location: 599305-599490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599314-599467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59931 4-599467 bp Feature: gene Location: 600176-600454 bp Feature: domain Description: YhhI Location: 600188-600311 bp Feature: domain Description: YhhI Location: 6001 88-60031 1 bp Feature: domain Description: YhhI Location: 600311-600395 bp Feature: domain Description: YhhI Location: 60031 1 -600395 bp Feature: gene Location: 600457-600645 bp Feature: domain Description: YhhI Location: 600466-600628 bp Feature: domain Description: YhhI Location: 600466-600628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galF (TIGR01105), DDE_Tnp_1_assoc (pfam13808), RVT-GII, YhhI (COG5433)

Seq: NMNH01000021.1 Escherichia coli strain MOD1-EC6980 MOD1-EC6980_21_length_69508_cov_58.9865, whole genome shotgun sequence (69508 bp)
Overview 1 RT 1: 61728-66729 bp Neighborhood of RT #1 [61728, 66731] RVT-Retrons DUF3800 PRK10190 Feature: gene Location: 61728-61931 bp Feature: gene Location: 62032-62289 bp Feature: gene Location: 62490-64214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62628-63252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62 62 8-632 52 bp Feature: gene Location: 64583-65353 bp Feature: domain Description: DUF3800 Location: 64598-65123 bp Feature: domain Description: DUF3800 Location: 64598-6512 3 bp Feature: gene Location: 65796-66731 bp Feature: domain Description: PRK10190 Location: 65802-66729 bp Feature: domain Description: PRK10190 Location: 65802 -6672 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF3800 (pfam12686), PRK10190 (L,D-transpeptidase; Provisional)

Seq: NMNH01000036.1 Escherichia coli strain MOD1-EC6980 MOD1-EC6980_36_length_7926_cov_39.8096, whole genome shotgun sequence (7926 bp)
Overview 1 RT 1: 1-4714 bp Neighborhood of RT #1 [1, 4722] DDE_Tnp_IS1 PHA02517 RVT-GII GIIM PHA02517 PRK13698 Feature: gene Location: 1-165 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4-163 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4-163 bp Feature: gene Location: 190-615 bp Feature: domain Description: PHA02517 Location: 214-550 bp Feature: domain Description: PHA02517 Location: 214-550 bp Feature: gene Location: 1207-2730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480-2212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1480-2212 bp Feature: domain Description: GIIM Note: maturase Location: 2287-2485 bp Feature: domain Description: GIIM Note: maturase Location: 2287-2485 bp Feature: gene Location: 2895-3299 bp Feature: domain Description: PHA02517 Location: 2898-3282 bp Feature: domain Description: PHA02517 Location: 2898-3 282 bp Feature: gene Location: 3751-4722 bp Feature: domain Description: PRK13698 Location: 3754-4714 bp Feature: domain Description: PRK13 698 Location: 3 754-4714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK13698 (ParB/RepB/Spo0J family plasmid partition protein)