myRT

myRT report for GCA_002468025.1_ASM246802v1

Download annotations/find similar RTs

Seq: NMNK01000025.1 Escherichia coli strain MOD1-EC6920 MOD1-EC6920_25_length_54843_cov_72.9789, whole genome shotgun sequence (54843 bp)
Overview 1 RT 1: 46178-49506 bp Neighborhood of RT #1 [46178, 49592] TnpB_IS66 HTH_23 InsE RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 46178-46525 bp Feature: domain Description: TnpB_IS66 Location: 46205-46496 bp Feature: domain Description: TnpB_IS66 Location: 46205-46496 bp Feature: gene Location: 46525-47172 bp Feature: domain Description: HTH_23 Location: 46555-46666 bp Feature: domain Description: HTH_23 Location: 46555-46666 bp Feature: domain Description: InsE Location: 46798-47152 bp Feature: domain Description: InsE Location: 46798-471 52 bp Feature: gene Location: 47468-48238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47471-47885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47471 -47885 bp Feature: domain Description: GIIM Note: maturase Location: 47936-48101 bp Feature: domain Description: GIIM Note: maturase Location: 47936-481 01 bp Feature: gene Location: 48277-48759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48598-48685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48598-48685 bp Feature: gene Location: 49046-49195 bp Feature: gene Location: 49206-49592 bp Feature: domain Description: CdiI_3 Location: 49230-49506 bp Feature: domain Description: CdiI_3 Location: 49230-49506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)

Seq: NMNK01000003.1 Escherichia coli strain MOD1-EC6920 MOD1-EC6920_3_length_347540_cov_67.2551, whole genome shotgun sequence (347540 bp)
Overview 1 RT 1: 268177-274554 bp Neighborhood of RT #1 [268177, 274574] XdhC PBP2_CrgA_like_5 RVT-UG8 PRK09678 Psu Feature: gene Location: 268177-269133 bp Feature: domain Description: XdhC Location: 268255-269110 bp Feature: domain Description: XdhC Location: 2 682 55-2 69110 bp Feature: gene Location: 269112-269522 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 269184-269496 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 69184-2 69496 bp Feature: gene Location: 270064-272082 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 270637-271090 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 70637-2 71090 bp Feature: gene Location: 273745-274017 bp Feature: domain Description: PRK09678 Location: 273754-273919 bp Feature: domain Description: PRK09678 Location: 2 73754-2 73919 bp Feature: gene Location: 274023-274574 bp Feature: domain Description: Psu Location: 274044-274554 bp Feature: domain Description: Psu Location: 2 74044-2 74554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)