myRT

myRT report for GCA_002468115.1_ASM246811v1

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Seq: NMNQ01000010.1 Escherichia coli strain MOD1-EC6913 MOD1-EC6913_10_length_155868_cov_38.5002, whole genome shotgun sequence (155868 bp)
Overview 1 RT 1: 53137-57018 bp Neighborhood of RT #1 [53137, 57023] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 53137-53595 bp Feature: domain Description: dut Location: 53143-53590 bp Feature: domain Description: dut Location: 531 43-53590 bp Feature: gene Location: 53702-54298 bp Feature: domain Description: slmA Location: 53708-54284 bp Feature: domain Description: slmA Location: 53708-54284 bp Feature: gene Location: 54344-55303 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54479-55028 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54479-55028 bp Feature: gene Location: 55601-56257 bp Feature: domain Description: pyrE Location: 55619-56252 bp Feature: domain Description: pyrE Location: 5561 9-56252 bp Feature: gene Location: 56307-57023 bp Feature: domain Description: rph Location: 56310-57018 bp Feature: domain Description: rph Location: 5631 0-5701 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NMNQ01000011.1 Escherichia coli strain MOD1-EC6913 MOD1-EC6913_11_length_155776_cov_29.0541, whole genome shotgun sequence (155776 bp)
Overview 1 RT 1: 26571-33337 bp Neighborhood of RT #1 [26571, 33337] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 26571-27047 bp Feature: domain Description: HTH_23 Location: 26649-26790 bp Feature: domain Description: HTH_2 3 Location: 2 6649-2 6790 bp Feature: gene Location: 27220-28338 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 27991-28162 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2 7991-2 8162 bp Feature: gene Location: 28994-30094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29177-29705 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 9177-2 9705 bp Feature: gene Location: 30814-32484 bp Feature: domain Description: AAA_15 Location: 30847-31855 bp Feature: domain Description: AAA_15 Location: 30847-31855 bp Feature: gene Location: 33023-33337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: NMNQ01000021.1 Escherichia coli strain MOD1-EC6913 MOD1-EC6913_21_length_82720_cov_25.2194, whole genome shotgun sequence (82720 bp)
Overview 1 RT 1: 79915-82458 bp Neighborhood of RT #1 [79915, 82458] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 79915-80109 bp Feature: gene Location: 80122-80256 bp Feature: gene Location: 80329-81996 bp Feature: RT Description: RVT_N Location: 80377-80614 bp Feature: RT Description: RVT_N Location: 803 77-80614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80665-81307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80665-813 07 bp Feature: domain Description: GIIM Note: maturase Location: 81358-81592 bp Feature: domain Description: GIIM Note: maturase Location: 813 58-81592 bp Feature: domain Description: HNHc Note: nucleases Location: 81802-81961 bp Feature: domain Description: HNHc Note: nucleases Location: 81802-81961 bp Feature: gene Location: 82012-82149 bp Feature: gene Location: 82276-82458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)