myRT

myRT report for GCA_002468125.1_ASM246812v1

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Seq: NMNR01000012.1 Escherichia coli strain MOD1-EC6911 MOD1-EC6911_12_length_140050_cov_47.8479, whole genome shotgun sequence (140050 bp)
Overview 1 RT 1: 53828-57711 bp Neighborhood of RT #1 [53828, 57716] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 53828-54286 bp Feature: domain Description: dut Location: 53834-54281 bp Feature: domain Description: dut Location: 53834-54281 bp Feature: gene Location: 54393-54989 bp Feature: domain Description: slmA Location: 54399-54975 bp Feature: domain Description: slmA Location: 54399-54975 bp Feature: gene Location: 55035-55994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55170-55719 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 551 70-5571 9 bp Feature: gene Location: 56292-56948 bp Feature: domain Description: pyrE Location: 56310-56943 bp Feature: domain Description: pyrE Location: 5631 0-56943 bp Feature: gene Location: 57000-57716 bp Feature: domain Description: rph Location: 57003-57711 bp Feature: domain Description: rph Location: 57003-5771 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NMNR01000045.1 Escherichia coli strain MOD1-EC6911 MOD1-EC6911_45_length_3545_cov_63.7601, whole genome shotgun sequence (3545 bp)
Overview 1 RT 1: 1-3267 bp Neighborhood of RT #1 [1, 3332] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-204 bp Feature: gene Location: 244-690 bp Feature: domain Description: PHA02517 Location: 247-688 bp Feature: domain Description: PHA02 517 Location: 2 47-688 bp Feature: gene Location: 807-2330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1812 bp Feature: domain Description: GIIM Note: maturase Location: 1887-2085 bp Feature: domain Description: GIIM Note: maturase Location: 1887-2 085 bp Feature: gene Location: 2284-2709 bp Feature: gene Location: 2922-3332 bp Feature: domain Description: PHA02517 Location: 2928-3267 bp Feature: domain Description: PHA02 517 Location: 2 92 8-32 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)