myRT

myRT report for GCA_002468915.1_ASM246891v1

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Seq: NMMF01000152.1 Escherichia coli strain MOD1-EC6590 MOD1-EC6590_152_length_5374_cov_36.5232, whole genome shotgun sequence (5374 bp)
Overview 1 RT 1: 2372-5022 bp Neighborhood of RT #1 [2372, 5022] DcuC RVT-GII Feature: gene Location: 2372-3733 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: domain Description: DcuC Location: 2375-3707 bp Feature: gene Location: 3786-4157 bp Feature: gene Location: 4379-4825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-4787 bp Feature: gene Location: 4873-5022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII

Seq: NMMF01000156.1 Escherichia coli strain MOD1-EC6590 MOD1-EC6590_156_length_5189_cov_67.0579, whole genome shotgun sequence (5189 bp)
Overview 1 RT 1: 224-3639 bp Neighborhood of RT #1 [224, 3644] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 224-655 bp Feature: domain Description: Tra5 Location: 230-647 bp Feature: domain Description: Tra5 Location: 2 30-647 bp Feature: gene Location: 766-996 bp Feature: gene Location: 1048-2289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 1-2 053 bp Feature: domain Description: GIIM Note: maturase Location: 2128-2284 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 8-2 2 84 bp Feature: gene Location: 2881-3348 bp Feature: domain Description: PHA02517 Location: 2947-3286 bp Feature: domain Description: PHA02 517 Location: 2 947-32 86 bp Feature: gene Location: 3345-3644 bp Feature: domain Description: InsE Location: 3375-3639 bp Feature: domain Description: InsE Location: 3375-3639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), InsE (COG2963)

Seq: NMMF01000197.1 Escherichia coli strain MOD1-EC6590 MOD1-EC6590_197_length_2661_cov_131.513, whole genome shotgun sequence (2661 bp)
Overview 1 RT 1: 147-1953 bp Neighborhood of RT #1 [147, 2048] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 147-2048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1245 bp Feature: domain Description: Intron_maturas2 Location: 1359-1617 bp Feature: domain Description: Intron_maturas2 Location: 13 59-1617 bp Feature: domain Description: HNHc Note: nucleases Location: 1791-1953 bp Feature: domain Description: HNHc Note: nucleases Location: 1791-1953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NMMF01000042.1 Escherichia coli strain MOD1-EC6590 MOD1-EC6590_42_length_41996_cov_48.9155, whole genome shotgun sequence (41996 bp)
Overview 1 RT 1: 8946-12826 bp Neighborhood of RT #1 [8946, 12831] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 8946-9404 bp Feature: domain Description: dut Location: 8952-9399 bp Feature: domain Description: dut Location: 8952-9399 bp Feature: gene Location: 9511-10107 bp Feature: domain Description: slmA Location: 9517-10093 bp Feature: domain Description: slmA Location: 9517-10093 bp Feature: gene Location: 10151-11110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10286-10835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10286-10835 bp Feature: gene Location: 11408-12064 bp Feature: domain Description: pyrE Location: 11426-12059 bp Feature: domain Description: pyrE Location: 114 26-12059 bp Feature: gene Location: 12115-12831 bp Feature: domain Description: rph Location: 12118-12826 bp Feature: domain Description: rph Location: 12118-12826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576), slmA (PRK09480)