myRT

myRT report for GCA_002468935.1_ASM246893v1

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Seq: NMMG01000012.1 Escherichia coli strain MOD1-EC6589 MOD1-EC6589_12_length_113841_cov_59.8346, whole genome shotgun sequence (113841 bp)
Overview 1 RT 1: 111097-113606 bp Neighborhood of RT #1 [111097, 113839] PRK09678 PRK09678 Psu RVT-Retrons Feature: gene Location: 111097-111543 bp Feature: domain Description: PRK09678 Location: 111106-111178 bp Feature: domain Description: PRK09678 Location: 1 1 1 1 06-1 1 1 1 78 bp Feature: domain Description: PRK09678 Location: 111301-111451 bp Feature: domain Description: PRK09678 Location: 1 1 1 301 -1 1 1 451 bp Feature: gene Location: 111617-112189 bp Feature: domain Description: Psu Location: 111635-112172 bp Feature: domain Description: Psu Location: 1 1 1 635-1 1 21 72 bp Feature: gene Location: 112379-113839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113051-113606 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3051 -1 1 3606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), RVT-Retrons

Seq: NMMG01000040.1 Escherichia coli strain MOD1-EC6589 MOD1-EC6589_40_length_41869_cov_54.9649, whole genome shotgun sequence (41869 bp)
Overview 1 RT 1: 38986-41406 bp Neighborhood of RT #1 [38986, 41406] HTH_XRE RVT-Retrons Feature: gene Location: 38986-39378 bp Feature: gene Location: 39415-39723 bp Feature: domain Description: HTH_XRE Location: 39427-39592 bp Feature: domain Description: HTH_XRE Location: 3942 7-39592 bp Feature: gene Location: 39701-40651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39881-40424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39881-4042 4 bp Feature: gene Location: 40776-41213 bp Feature: gene Location: 41212-41406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NMMG01000089.1 Escherichia coli strain MOD1-EC6589 MOD1-EC6589_89_length_7460_cov_13.7453, whole genome shotgun sequence (7460 bp)
Overview 1 RT 1: 100-2874 bp Neighborhood of RT #1 [100, 2874] RAYT RVT-GII GIIM Feature: gene Location: 100-639 bp Feature: domain Description: RAYT Location: 178-541 bp Feature: domain Description: RAYT Location: 178-541 bp Feature: gene Location: 793-2139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081-1699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081-1699 bp Feature: domain Description: GIIM Note: maturase Location: 1747-1978 bp Feature: domain Description: GIIM Note: maturase Location: 1747-1978 bp Feature: gene Location: 2170-2367 bp Feature: gene Location: 2731-2874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: NMMG01000093.1 Escherichia coli strain MOD1-EC6589 MOD1-EC6589_93_length_6462_cov_18.4313, whole genome shotgun sequence (6462 bp)
Overview 1 RT 1: 1-3223 bp Neighborhood of RT #1 [1, 3354] PHA02517 RVT-GII GIIM PHA02517 PT-VENN Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4 -127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864 -2062 bp Feature: gene Location: 2430-2852 bp Feature: domain Description: PHA02517 Location: 2433-2844 bp Feature: domain Description: PHA02517 Location: 24 33-284 4 bp Feature: gene Location: 2953-3354 bp Feature: domain Description: PT-VENN Location: 3130-3223 bp Feature: domain Description: PT-VENN Location: 3130-3223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PT-VENN (pfam04829), RVT-GII, GIIM (pfam08388)