myRT

myRT report for GCA_002469315.1_ASM246931v1

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Seq: DKGP01000016.1 TPA_asm: Firmicutes bacterium UBA6767 UBA6767_contig_1075, whole genome shotgun sequence (5369 bp)
Overview 1 RT 1: 257-5255 bp Neighborhood of RT #1 [257, 5255] PhoE RVT-GII GIIM Feature: gene Location: 257-865 bp Feature: domain Description: PhoE Location: 260-794 bp Feature: domain Description: PhoE Location: 260-794 bp Feature: gene Location: 1195-2049 bp Feature: gene Location: 2254-3501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458-3115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458-31 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 3196-3418 bp Feature: domain Description: GIIM Note: maturase Location: 31 96-341 8 bp Feature: gene Location: 4043-4201 bp Feature: gene Location: 4224-5255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PhoE (COG0406)

Seq: DKGP01000030.1 TPA_asm: Firmicutes bacterium UBA6767 UBA6767_contig_132, whole genome shotgun sequence (95642 bp)
Overview 1 RT 1: 82540-89695 bp Neighborhood of RT #1 [82540, 89763] SLH SLH SLH PKD PKD PKD RVT-GII GIIM PulO pilus_cpaB Feature: gene Location: 82540-86229 bp Feature: domain Description: SLH Location: 82639-82762 bp Feature: domain Description: SLH Location: 82 639-82 762 bp Feature: domain Description: SLH Location: 82825-82951 bp Feature: domain Description: SLH Location: 82 82 5-82 951 bp Feature: domain Description: SLH Location: 83056-83143 bp Feature: domain Description: SLH Location: 83056-83143 bp Feature: domain Description: PKD Location: 83440-83527 bp Feature: domain Description: PKD Location: 83440-8352 7 bp Feature: domain Description: PKD Location: 83863-84079 bp Feature: domain Description: PKD Location: 83863-84079 bp Feature: domain Description: PKD Location: 85690-85783 bp Feature: domain Description: PKD Location: 85690-85783 bp Feature: gene Location: 86275-86559 bp Feature: gene Location: 87118-88527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87469-88087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87469-88087 bp Feature: domain Description: GIIM Note: maturase Location: 88138-88369 bp Feature: domain Description: GIIM Note: maturase Location: 88138-88369 bp Feature: gene Location: 88630-88911 bp Feature: domain Description: PulO Location: 88657-88894 bp Feature: domain Description: PulO Location: 88657-88894 bp Feature: gene Location: 88945-89763 bp Feature: domain Description: pilus_cpaB Location: 89038-89695 bp Feature: domain Description: pilus_cpaB Location: 89038-89695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), PKD (smart00089), RVT-GII, GIIM (pfam08388), PulO (COG1989), pilus_cpaB (TIGR03177)

Seq: DKGP01000034.1 TPA_asm: Firmicutes bacterium UBA6767 UBA6767_contig_156, whole genome shotgun sequence (64683 bp)
Overview 1 RT 1: 31300-35950 bp Neighborhood of RT #1 [31300, 36549] Relaxase Relaxase RHH_1 MobC RVT-GII GIIM DUF5131 Feature: gene Location: 31300-32736 bp Feature: domain Description: Relaxase Location: 31420-31678 bp Feature: domain Description: Relaxase Location: 3 1420-3 1678 bp Feature: domain Description: Relaxase Location: 31810-32521 bp Feature: domain Description: Relaxase Location: 3 1810-3 2521 bp Feature: gene Location: 32694-33014 bp Feature: domain Description: RHH_1 Location: 32724-32823 bp Feature: domain Description: RHH_1 Location: 3 2724-3 2823 bp Feature: domain Description: MobC Location: 32868-32994 bp Feature: domain Description: MobC Location: 3 2868-3 2994 bp Feature: gene Location: 33136-34401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33349-33970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 49-3 3 970 bp Feature: domain Description: GIIM Note: maturase Location: 34012-34240 bp Feature: domain Description: GIIM Note: maturase Location: 3 4012-3 4240 bp Feature: gene Location: 35329-35673 bp Feature: gene Location: 35698-36549 bp Feature: domain Description: DUF5131 Location: 35746-35950 bp Feature: domain Description: DUF513 1 Location: 3 5746-3 5950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RHH_1 (pfam01402), MobC (pfam05713), RVT-GII, GIIM (pfam08388), DUF5131 (pfam07505)

Seq: DKGP01000042.1 TPA_asm: Firmicutes bacterium UBA6767 UBA6767_contig_295, whole genome shotgun sequence (71691 bp)
Overview 1 RT 1: 9-3723 bp Neighborhood of RT #1 [9, 3746] RVT-GII RVT-GII YigB Nudix_Hydrolase_7 Feature: gene Location: 9-899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21-4 38 bp Feature: gene Location: 1004-1414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1235-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1235-14 03 bp Feature: gene Location: 2283-2981 bp Feature: domain Description: YigB Location: 2286-2967 bp Feature: domain Description: YigB Location: 2286-2967 bp Feature: gene Location: 3330-3746 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 3351-3723 bp Feature: domain Description: Nudix_Hydrolase_7 Location: 3351-3723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YigB (COG1011), Nudix_Hydrolase_7 (cd04664)