myRT

myRT report for GCA_002471925.1_ASM247192v1

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Seq: DKQX01000118.1 TPA_asm: Alteromonas australica isolate UBA7297 UBA7297_contig_13889, whole genome shotgun sequence (24187 bp)
Overview 1 RT 1: 9074-18986 bp Neighborhood of RT #1 [9074, 19162] DUF45 COG0610 RVT-UG5 YjgR YjgR SIR2_2 Feature: gene Location: 9074-9823 bp Feature: domain Description: DUF45 Location: 9182-9797 bp Feature: domain Description: DUF45 Location: 91 82-9797 bp Feature: gene Location: 9838-13119 bp Feature: domain Description: COG0610 Location: 9865-12958 bp Feature: domain Description: COG061 0 Location: 9865-1 2958 bp Feature: gene Location: 13163-16105 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13652-14108 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3652-1 41 08 bp Feature: gene Location: 16333-18075 bp Feature: domain Description: YjgR Location: 16783-16978 bp Feature: domain Description: YjgR Location: 1 6783-1 6978 bp Feature: domain Description: YjgR Location: 17428-18007 bp Feature: domain Description: YjgR Location: 1 7428-1 8007 bp Feature: gene Location: 18077-19162 bp Feature: domain Description: SIR2_2 Location: 18491-18986 bp Feature: domain Description: SIR2_2 Location: 1 8491 -1 8986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF45 (pfam01863), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5, YjgR (COG0433), SIR2_2 (pfam13289)

Seq: DKQX01000193.1 TPA_asm: Alteromonas australica isolate UBA7297 UBA7297_contig_2944, whole genome shotgun sequence (34824 bp)
Overview 1 RT 1: 1713-10648 bp Neighborhood of RT #1 [1713, 10662] SlyB M48C_Oma1_like RVT-UG3 RVT-UG8 PRK05711 PRK10334 Feature: gene Location: 1713-2201 bp Feature: domain Description: SlyB Location: 1776-2097 bp Feature: domain Description: SlyB Location: 1776-2 097 bp Feature: gene Location: 2409-3206 bp Feature: domain Description: M48C_Oma1_like Location: 2616-3162 bp Feature: domain Description: M48C_Oma1_like Location: 2 616-3162 bp Feature: gene Location: 3496-4707 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3787-4252 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3787-42 52 bp Feature: gene Location: 4697-6667 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5201-5645 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 52 01-5645 bp Feature: gene Location: 7063-9573 bp Feature: domain Description: PRK05711 Location: 7069-7588 bp Feature: domain Description: PRK05711 Location: 7069-7588 bp Feature: gene Location: 9817-10662 bp Feature: domain Description: PRK10334 Location: 9886-10648 bp Feature: domain Description: PRK10334 Location: 9886-10648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SlyB (COG3133), M48C_Oma1_like (cd07342), RVT-UG3, RVT-UG8, PRK05711 (DNA polymerase III subunit epsilon; Provisional), PRK10334 (small-conductance mechanosensitive channel MscS)

Seq: DKQX01000212.1 TPA_asm: Alteromonas australica isolate UBA7297 UBA7297_contig_35784, whole genome shotgun sequence (3829 bp)
Overview 1 RT 1: 291-3570 bp Neighborhood of RT #1 [291, 3578] RVT-Retrons RhaT Feature: gene Location: 291-2144 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 426-1146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 426-1146 bp Feature: gene Location: 2513-2647 bp Feature: gene Location: 2721-3578 bp Feature: domain Description: RhaT Location: 2760-3570 bp Feature: domain Description: RhaT Location: 2760-3 570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RhaT (TIGR00776)