myRT

myRT report for GCA_002473455.1_ASM247345v1

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Seq: NKVG01000122.1 Escherichia coli strain MOD1-EC5833 MOD1-EC5833_123_length_15049_cov_168, whole genome shotgun sequence (15049 bp)
Overview 1 RT 1: 7806-11695 bp Neighborhood of RT #1 [7806, 11700] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7806-8120 bp Feature: gene Location: 8518-8715 bp Feature: gene Location: 8884-9318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9076-9292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9076-9292 bp Feature: gene Location: 9291-9944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9294-9702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9294-9702 bp Feature: domain Description: GIIM Note: maturase Location: 9750-9942 bp Feature: domain Description: GIIM Note: maturase Location: 9750-9942 bp Feature: gene Location: 10320-10538 bp Feature: gene Location: 10669-11700 bp Feature: domain Description: LacI Location: 10711-10846 bp Feature: domain Description: LacI Location: 1 071 1 -1 0846 bp Feature: domain Description: PBP1_GntR Location: 10885-11695 bp Feature: domain Description: PBP1 _GntR Location: 1 0885-1 1 695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: NKVG01000046.1 Escherichia coli strain MOD1-EC5833 MOD1-EC5833_46_length_66183_cov_166, whole genome shotgun sequence (66183 bp)
Overview 1 RT 1: 5101-10566 bp Neighborhood of RT #1 [5101, 10568] Methyltransf_12 RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 5101-5769 bp Feature: domain Description: Methyltransf_12 Location: 5275-5566 bp Feature: domain Description: Methyltransf_12 Location: 52 75-5566 bp Feature: gene Location: 6037-6210 bp Feature: gene Location: 6540-8144 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6831-7422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6831-742 2 bp Feature: domain Description: TIR_2 Location: 7749-8082 bp Feature: domain Description: TIR_2 Location: 7749-8082 bp Feature: gene Location: 8502-8762 bp Feature: domain Description: PRK10597 Location: 8505-8745 bp Feature: domain Description: PRK10597 Location: 8505-8745 bp Feature: gene Location: 8982-10568 bp Feature: domain Description: prfC Location: 9000-10566 bp Feature: domain Description: prfC Location: 9000-10566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_12 (pfam08242), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: NKVG01000049.1 Escherichia coli strain MOD1-EC5833 MOD1-EC5833_49_length_2272_cov_671, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)