myRT

myRT report for GCA_002473605.1_ASM247360v1

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Seq: NKVR01000014.1 Escherichia coli strain MOD1-EC5756 MOD1-EC5756_14_length_97705_cov_31.1318, whole genome shotgun sequence (97705 bp)
Overview 1 RT 1: 23559-27302 bp Neighborhood of RT #1 [23559, 27313] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23559-24041 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: gene Location: 24175-24342 bp Feature: gene Location: 24727-25500 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 24862-2531 5 bp Feature: gene Location: 25904-26122 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 25907-261 05 bp Feature: gene Location: 26213-27313 bp Feature: domain Description: D Location: 26219-27302 bp Feature: domain Description: D Location: 2621 9-27302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NKVR01000029.1 Escherichia coli strain MOD1-EC5756 MOD1-EC5756_29_length_55796_cov_32.3389, whole genome shotgun sequence (55796 bp)
Overview 1 RT 1: 49289-53171 bp Neighborhood of RT #1 [49289, 53176] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49289-49747 bp Feature: domain Description: dut Location: 49295-49742 bp Feature: domain Description: dut Location: 492 95-49742 bp Feature: gene Location: 49854-50450 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: domain Description: slmA Location: 49860-50436 bp Feature: gene Location: 50496-51455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50631-51180 bp Feature: gene Location: 51753-52409 bp Feature: domain Description: pyrE Location: 51771-52404 bp Feature: domain Description: pyrE Location: 51771-52 404 bp Feature: gene Location: 52460-53176 bp Feature: domain Description: rph Location: 52463-53171 bp Feature: domain Description: rph Location: 52 463-53171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NKVR01000035.1 Escherichia coli strain MOD1-EC5756 MOD1-EC5756_35_length_42980_cov_17.3241, whole genome shotgun sequence (42980 bp)
Overview 1 RT 1: 41420-42871 bp Neighborhood of RT #1 [41420, 42978] RVT_N RVT-GII Feature: gene Location: 41420-41620 bp Feature: gene Location: 41731-41868 bp Feature: gene Location: 41893-42978 bp Feature: domain Description: RVT_N Location: 41947-42190 bp Feature: domain Description: RVT_N Location: 41947-42190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42235-42871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4223 5-42871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NKVR01000065.1 Escherichia coli strain MOD1-EC5756 MOD1-EC5756_65_length_10194_cov_21.0331, whole genome shotgun sequence (10194 bp)
Overview 1 RT 1: 8005-10114 bp Neighborhood of RT #1 [8005, 10114] InsE RVT_N RVT-GII Feature: gene Location: 8005-8424 bp Feature: domain Description: InsE Location: 8020-8404 bp Feature: domain Description: InsE Location: 8020-84 04 bp Feature: gene Location: 8279-8695 bp Feature: gene Location: 8757-9680 bp Feature: domain Description: RVT_N Location: 8805-9048 bp Feature: domain Description: RVT_N Location: 8805-904 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9093-9663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9093-9663 bp Feature: gene Location: 9707-10114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII