myRT

myRT report for GCA_002474345.1_ASM247434v1

Download annotations/find similar RTs

Seq: DKQD01000192.1 TPA_asm: Bacteriovoracaceae bacterium UBA7317 UBA7317_contig_13679, whole genome shotgun sequence (13240 bp)
Overview 1 RT 1: 2-7520 bp Neighborhood of RT #1 [2, 7520] RHS_repeat RHS_repeat RHS_repeat RHS_repeat RhsA RVT-UG4 PBP2_HisK Feature: gene Location: 2-4432 bp Feature: domain Description: RHS_repeat Location: 326-404 bp Feature: domain Description: RHS_repeat Location: 326-404 bp Feature: domain Description: RHS_repeat Location: 452-539 bp Feature: domain Description: RHS_repeat Location: 452-539 bp Feature: domain Description: RHS_repeat Location: 1115-1160 bp Feature: domain Description: RHS_repeat Location: 1 1 1 5-1 1 60 bp Feature: domain Description: RHS_repeat Location: 1295-1343 bp Feature: domain Description: RHS_repeat Location: 1 295-1 343 bp Feature: domain Description: RhsA Location: 2285-2612 bp Feature: domain Description: RhsA Location: 2285-261 2 bp Feature: gene Location: 4502-4699 bp Feature: gene Location: 5206-5403 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5209-5386 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5209-5386 bp Feature: gene Location: 5923-6705 bp Feature: domain Description: PBP2_HisK Location: 6025-6652 bp Feature: domain Description: PBP2_HisK Location: 6025-6652 bp Feature: gene Location: 6939-7520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHS_repeat (pfam05593), RhsA (COG3209), RVT-UG4, PBP2_HisK (cd13704)

Seq: DKQD01000116.1 TPA_asm: Bacteriovoracaceae bacterium UBA7317 UBA7317_contig_14324, whole genome shotgun sequence (43505 bp)
Overview 1 RT 1: 11511-23015 bp Neighborhood of RT #1 [11511, 24364] SpvB VCBS VCBS VCBS VCBS YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core RVT-UG4 7TMR-DISMED2 7TMR-DISM_7TM Feature: gene Location: 11511-12143 bp Feature: gene Location: 12474-19568 bp Feature: domain Description: SpvB Location: 12741-12984 bp Feature: domain Description: SpvB Location: 12 741-12 984 bp Feature: domain Description: VCBS Location: 13794-14046 bp Feature: domain Description: VCBS Location: 13794-14046 bp Feature: domain Description: VCBS Location: 14295-14511 bp Feature: domain Description: VCBS Location: 142 95-14511 bp Feature: domain Description: VCBS Location: 14643-14739 bp Feature: domain Description: VCBS Location: 14643-14739 bp Feature: domain Description: VCBS Location: 14799-15000 bp Feature: domain Description: VCBS Location: 14799-15000 bp Feature: domain Description: YD_repeat_2x Location: 16425-16482 bp Feature: domain Description: YD_repeat_2 x Location: 1642 5-16482 bp Feature: domain Description: RHS_repeat Location: 16692-16797 bp Feature: domain Description: RHS_repeat Location: 16692 -16797 bp Feature: domain Description: RHS_repeat Location: 16908-16992 bp Feature: domain Description: RHS_repeat Location: 16908-16992 bp Feature: domain Description: RHS_repeat Location: 17028-17106 bp Feature: domain Description: RHS_repeat Location: 1702 8-17106 bp Feature: domain Description: RHS_repeat Location: 17667-17772 bp Feature: domain Description: RHS_repeat Location: 17667-17772 bp Feature: domain Description: Rhs_assc_core Location: 18357-18582 bp Feature: domain Description: Rhs_assc_core Location: 18357-18582 bp Feature: gene Location: 19629-20858 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19956-20412 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 19956-2 0412 bp Feature: gene Location: 21238-21609 bp Feature: gene Location: 21878-24364 bp Feature: domain Description: 7TMR-DISMED2 Location: 21980-22331 bp Feature: domain Description: 7TMR-DISMED2 Location: 2 1980-2 2 331 bp Feature: domain Description: 7TMR-DISM_7TM Location: 22406-23015 bp Feature: domain Description: 7TMR-DISM_7TM Location: 2 2 406-2 3015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpvB (pfam03534), VCBS (pfam13517), YD_repeat_2x (TIGR01643), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), RVT-UG4, 7TMR-DISMED2 (pfam07696), 7TMR-DISM_7TM (pfam07695)